| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00962 |
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| Symbol | rpsD |
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| ID | 6776433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1003519 |
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| End bp | 1004139 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642754394 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_002125270 |
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| Protein GI | 196155781 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00755213 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC AAAACTCAAA CTTAGCCGTC GCGAAGGAAC TGACCTGTTC
CTAAAAAGCG GCGTTCGCGC AATCGATTCT AAATGTAAAA TCGATACAGC GCCTGGTCAG
CACGGTGCCC GTCGTGGCCG TCTGTCTGAC TACGGTGTTC AGCTGCGTGA AAAACAAAAA
GTTCGTCGTA TGTACGGCGT ACTGGAAAAG CAATTCCGCA ACTACTATAA AGAAGCTGCA
CGTCTAAAAG GTAACACAGG TGAAAACTTG CTACAGCTTT TAGAACAGCG TCTTGATAAC
GTAGTTTACC GTATGGGTTT CGCTAGCACA CGTGCTGAAG CACGTCAGCT AGTTAGCCAC
AAGGCGATCA TGGTAAATGG TCAAGTTGTG AACATCCCAT CGTTTAACGT TTCTGCCGAA
GACGTGGTTT CTGTTCGTGA AAAAGCTAAG AAGCAAGCGC GTATCGTGGC TGCTTTGGAA
CTGGCTGACC AACGTGAGAA GCCAACCTGG ATTGAAGTAG ACAGCAGCAA AATGGAAGGC
ACTTTCAAGC GCGTTCCTGA AAGAACTGAC CTGTCTGCGG AAATTAACGA ACAGTTGATC
GTCGAACTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKIDTAPGQ HGARRGRLSD YGVQLREKQK
VRRMYGVLEK QFRNYYKEAA RLKGNTGENL LQLLEQRLDN VVYRMGFAST RAEARQLVSH
KAIMVNGQVV NIPSFNVSAE DVVSVREKAK KQARIVAALE LADQREKPTW IEVDSSKMEG
TFKRVPERTD LSAEINEQLI VELYSK
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