Gene MADE_00953 details

Gene Information

• Locus tag: MADE_00953
• Symbol: rplF
• ID: 6776478
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 999042
• End bp: 999575
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 642754385
• Product: 50S ribosomal protein L6
• Protein accession: YP_002125261
• Protein GI: 196155772
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0734749
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGTA TAGCAAAAGC CCCAGTAGAC GTTGTATCAG GTGTAGAAGT TTCTATCTCT 
GGTCAAGAAG TTACTGTAAA AGGTAGTAAA GGCACTTTGA CCCGCGTATT TAACGACGCT 
GTAGAAGTTG CACAGGAAGA GAACCAACTT AAAGCACTTC CACGTGAAGG TTTTGCTGAT 
AGCTGGGCAC AGGCTGGTAC TGTTCGCTCT ATCCTAAATG CAATGGTTCA AGGTGTTTCA 
CAAGGTTTCG AGAAAAAACT TACGCTTCTA GGTGTTGGTT ACCGTGCACA AGCACAAGGT 
AGCAAACTTA ACCTTACGCT AGGTTTCTCT CATCCTGTAG TATACGAAAT GCCTGAAGGC 
ATTACGGTTG AAACTCCTAG CCAAACTGAA ATCGTCGTGA AAGGCGCCGA TAAGCAGGTG 
GTTGGTCAGG TTGCGGCGAA CATTCGCGGT TACCGTCCAC CAGAGCCTTA CAAAGGCAAA 
GGTGTACGTT ATGCTGACGA AAACGTACGT CGTAAAGAAG CTAAGAAAAA GTAG 

 

Protein sequence

MSRIAKAPVD VVSGVEVSIS GQEVTVKGSK GTLTRVFNDA VEVAQEENQL KALPREGFAD 
SWAQAGTVRS ILNAMVQGVS QGFEKKLTLL GVGYRAQAQG SKLNLTLGFS HPVVYEMPEG 
ITVETPSQTE IVVKGADKQV VGQVAANIRG YRPPEPYKGK GVRYADENVR RKEAKKK