| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00897 |
|---|
| Symbol | |
|---|
| ID | 6778969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 945651 |
|---|
| End bp | 948305 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 642754329 |
|---|
| Product | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal |
|---|
| Protein accession | YP_002125205 |
|---|
| Protein GI | 196155716 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.717501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT CTCCTCAAAA CTTTAACTTT GAACGTTGTG AAGACGAGCC GATACACATT
CCCGAAAGTG TACAAAGTTA CGGTTTTCTA ATTGCGTTTA GCTACGACGA CCTGAATATC
TCAATTGTCA GTGAAAACTG CGAAACGATA TTTGCAGAGG GGATCGTTGG AAAAAACTTC
TTGGATATTC TTTCCTCTGA TACTAACGAG CGCGCTTTTC TTGAAGAAAC CTTCGATAGA
GTATCAAAAA GCAAAATACG CCTACCTATT AAGTTGATTC TAAATAAAGC ACTTTTAAAG
GAAGGCGAAG CCAAAGATTA TTTAGCGGTT GTTTACGATT CAGGTCATCA TTATGTGGTC
GAGCTTGAGC CTGCTACAGA ATTTAGAGAT GCCTACAGCG CAGAGCAATT CATTAAGCTT
TATTCAATGT CTATTGCGCC ACGCTTCAAA GAAATGACAT CTCTCGGTGA GATGGCGCAA
GAGATGGTGT CAACCATTAG GTATCTCACC AATATGGATA GAGTCGTACT TTATAAATTT
AATGAAGACT ACTCGGGGAA GGTTATAGCA GAAGCCAAAG CTGAAGATAT GGAGTCTTAC
AAAGATTTGT ATTTCCCCGC CTCAGATATA CCAAAGCAGG CCAGGGAGTT GTACAAAACA
AACTGGGTAA GGCTAACTCC TGATACTGAG TTGCCCCCAG CTAGGTTAGT GCCTTCTGTG
GAGGAGTCGG GACGAAAGCG GTTAGATTTG ACTCGTTCGC TTCTGCGCAC GTTCTCGCCT
ATTCACCTGC AATATATTAG AAACCAAGGT TTGCGGGCTT CATTTTCCAT TTCGTTAGTC
ACCGATGGTA AGTTATACGG GCTCATTTCC TGTCATCATC GTGAGGCCTG CTATATTCCT
CAAGATGTAA GGCTACAGTG CGAGAATTTA AGCCAATTGT TTAGCTGGCA TTTGTTGGCT
AAAGAAGAAG AAATTGCGAA ACAGAAGAAG TTTGTCACCG ATGAAGCTGT TGATGCCATG
CTAGACAAAA TTGGCCCAGC TAACCCTATT AGTCGCGTGG TTAAAAGCGG CGAACGGGCT
TTTTTAGATG CGCTCAATAG TTCAGGGTTT GTTTACTATT CACAGTACGA AACCATTACG
CTTGGCTCTA CCTTACCGAT AGACCTTATT AAAGACATCT TTTCTAAGGC CAGTAGTGAA
GGCGGTTTTC CTTACACAAA CGATTCACTT TATGATGATT ACCCGGAAGC ACGAGAGCAT
GGTATTGCGG GTATTATGAT CATTCCACTG TTTGAAAAAA AGCAGTACTT TACCGCTTGG
TTTAGAAAAG AAACCCATCG CATTCAAAAG TGGATTGGCG CTGAAGATGA AAAGTCAGAA
GAAGCACCAA AATCTGAGCG CCTTAAACCT CGTTCGTCTT TTACTATCCA TACTCGAAAA
ATTGAGGGGC GTTCAACACC TTTTGATAAA GCAGATGTTG ATACCGCCAA TCGGCTAAAT
AGAATGTTTT TGGTATATGC TCTTGATGTG CAAGAGCGTA TGCATATAAG CATCCAAGAA
CTCGAAAAAC AAGATAATTA CAGAAATGAA TTCCTTGCTA CCTTGGCTCA TGAATTACGA
AACCCATTGG GCCCAATCAT GTCGGGGGCA AGCATTTTAG AAACGGTCGA TGATGATAAA
ACGCGTAAAA GAGTAACGGC AATTATTAAT CGACAAGCGG AATACATGTC TAAACTCATC
AACGACTTAA TGGATGTATC TCGTATTACC CGCGGCAAGG TTAAGCTTGA ATTTGAAAGA
TTGAGCATTC AAGACGTCCT TTCTGACTCG CTTGAAATTG TTGAGCAGCA AGTGAAAGCC
AAGAAGCACG ATATAACCGT AAATTGTCTT GATGAAGATG TGACCGTTTA CGGAGATAAA
GCGCGCTTAA GCCAGATTTT CTCTAACATT ATTCATAACG CGACTAAGTA TACAAAAGAG
TCGGGGAAGA TTGTTGTAGA TATCAGAAAA GACGGAGTAA TGATTGTTGT TTCTGTTAAA
GATAACGGCA TGGGCATCCC TGAAGATAGG CTAAAAGATG TGTTCAACAT GTTCACCCAA
ATTGAAGCGC ATTCTACACA TACCAAAGGC GGGCTTGGTA TTGGGCTAAC ATTGGTGAGT
AAGCTGGTGG CATTACATCA TGGCGAAGTA TCTGTAATGA GCGAGGGCGT CGGTCAAGGA
AGTACTTTTG AAGTTAGGCT ACCTATCTCC AAAACAGCTT TTGAGCAGTC TGACAACAAA
GAAATGGAAT CTGTTGTACC AAATAAAAGT AAAGTGATGT TTGTGGATGA CAACGCCGAT
CTTATCGATG CTTATTGCTT GTTAGCTGAG TCGATGGGGG TTACTGCTTT GGGAATTACC
TCTCCGACAG AAGCGGTAGA GAAATTTAAA GCCTTTAAGC CAAACTGTGT ATTCCTTGAT
ATCGGCATGC CAGATATTGA TGGTTATGAG CTAGTTAAAA TGCTTAAAGC CCTACCAGAA
GCAGACAGCG TTAAGTTTTA CTCTCAAAGC GGGTGGGGGT CAGGCAAATA TATCGAGGAT
TCTAAATCTG CTGGGTTCGA CAAACACTTT GTAAAGCCGC TGTCTAAAGA AACTATCAGG
TCAGTGCTAA GTTAG
|
|---|
| Protein sequence | MNQSPQNFNF ERCEDEPIHI PESVQSYGFL IAFSYDDLNI SIVSENCETI FAEGIVGKNF
LDILSSDTNE RAFLEETFDR VSKSKIRLPI KLILNKALLK EGEAKDYLAV VYDSGHHYVV
ELEPATEFRD AYSAEQFIKL YSMSIAPRFK EMTSLGEMAQ EMVSTIRYLT NMDRVVLYKF
NEDYSGKVIA EAKAEDMESY KDLYFPASDI PKQARELYKT NWVRLTPDTE LPPARLVPSV
EESGRKRLDL TRSLLRTFSP IHLQYIRNQG LRASFSISLV TDGKLYGLIS CHHREACYIP
QDVRLQCENL SQLFSWHLLA KEEEIAKQKK FVTDEAVDAM LDKIGPANPI SRVVKSGERA
FLDALNSSGF VYYSQYETIT LGSTLPIDLI KDIFSKASSE GGFPYTNDSL YDDYPEAREH
GIAGIMIIPL FEKKQYFTAW FRKETHRIQK WIGAEDEKSE EAPKSERLKP RSSFTIHTRK
IEGRSTPFDK ADVDTANRLN RMFLVYALDV QERMHISIQE LEKQDNYRNE FLATLAHELR
NPLGPIMSGA SILETVDDDK TRKRVTAIIN RQAEYMSKLI NDLMDVSRIT RGKVKLEFER
LSIQDVLSDS LEIVEQQVKA KKHDITVNCL DEDVTVYGDK ARLSQIFSNI IHNATKYTKE
SGKIVVDIRK DGVMIVVSVK DNGMGIPEDR LKDVFNMFTQ IEAHSTHTKG GLGIGLTLVS
KLVALHHGEV SVMSEGVGQG STFEVRLPIS KTAFEQSDNK EMESVVPNKS KVMFVDDNAD
LIDAYCLLAE SMGVTALGIT SPTEAVEKFK AFKPNCVFLD IGMPDIDGYE LVKMLKALPE
ADSVKFYSQS GWGSGKYIED SKSAGFDKHF VKPLSKETIR SVLS
|
|---|
| |