| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00883 |
|---|
| Symbol | |
|---|
| ID | 6778664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 933683 |
|---|
| End bp | 934861 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642754315 |
|---|
| Product | ABC-type branched-chain amino acid transport system, permease component |
|---|
| Protein accession | YP_002125191 |
|---|
| Protein GI | 196155702 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTT TATCAAACGT TTTTCAAGAG AAGTTTAAAG CGCTAAGCAA CCTTCATGTA
GTGGTGAGCG TCTTATTTCT ATCAACGGCT TACGTAACTT TTTGTAATCT GGTTTTCGCT
GACGGTGCTT TGTTACACGT TAGTGACTAC ACAGTAAGTC TTTTAGGAAA GTATTTGTGC
TATGCACTTT TGGCCTTAGC CGTAGACCTA GTATGGGGTT ACTGTGGCGT GCTTAGCTTA
GGGCACGGAG CCTTTTTTAC ACTCGGTGGG TACGCCATGG GCATGTATCT TATGCGCCAA
ATTGGTGACA GAGGTGTTTA TGGTAATCCC GACCTTCCAG ATTTCATGGT TTTTCTAAAT
TGGACGGAAA TTCCTTGGTT TTGGGCGGGA AGTAGCAGTG CAATTTGGAT GGTTGTGATG
GTGTTTCTAG GGCCTGGGTT GCTTGCCTTT ATTTTTGGAA CACTGGCATT TAGATCGCGA
GTAAGTGGGG TGTATCTATC TATTATGACT CAAGCAATGA CATACGCGTT GATGTTGGCC
TTTTTTAGAA ATGAAATGGG ATTTGGTGGC AATAATGGAC TAACCGATTT TAAAGAAATA
TTTAGTTTCT CTTTGCAAAA CCCCAGTACC AAACTTGCGT TATTTGTTGC TACAGCTATT
GCATTAGCAG TTGGTTACGC CATTAGTCAC TTTATAGTTT CTTCAAAAAT GGGAAGAGTT
ATTACCGCTA CGCGAGATGC AGAAAGCCGC GTTCGTTTCG TAGGATATAA GCCAGAGCAT
TATAAAGTAT GGATATTCGT TGTATCTGCA ATGCTAGCCG GTTTAGCTGG TGCCCTTTAT
GTTCCGCAAG TTGGCATTAT AAATCCTGGT GAGTTTTCTC CGCTCAACTC AATAGAAATG
GTGGTGTGGG TTGCGATTGG CGGACGCTGC ACTCTTTATG GTGCGATCAT CGGAGCTATT
GTAGTGAGTT ACGCGAAAAC CCGATTCACC GCTATTATGC CAGAAGCTTG GCTTTTCGCT
CTCGGAGGCC TATTTGTATT GGTCACGCTG TTACTTCCAA AGGGTATAGC CGGTTTGCTA
CCTAATATCT TCGACAAACT ATCAATGTTT AATAGTGGGC CTACAACGTC AAAAGAAGAA
GCACCCTACC ATGTAGGTAG TAAAAAGGAA TTAGAATGA
|
|---|
| Protein sequence | MTILSNVFQE KFKALSNLHV VVSVLFLSTA YVTFCNLVFA DGALLHVSDY TVSLLGKYLC
YALLALAVDL VWGYCGVLSL GHGAFFTLGG YAMGMYLMRQ IGDRGVYGNP DLPDFMVFLN
WTEIPWFWAG SSSAIWMVVM VFLGPGLLAF IFGTLAFRSR VSGVYLSIMT QAMTYALMLA
FFRNEMGFGG NNGLTDFKEI FSFSLQNPST KLALFVATAI ALAVGYAISH FIVSSKMGRV
ITATRDAESR VRFVGYKPEH YKVWIFVVSA MLAGLAGALY VPQVGIINPG EFSPLNSIEM
VVWVAIGGRC TLYGAIIGAI VVSYAKTRFT AIMPEAWLFA LGGLFVLVTL LLPKGIAGLL
PNIFDKLSMF NSGPTTSKEE APYHVGSKKE LE
|
|---|
| |