| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00780 |
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| Symbol | |
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| ID | 6777219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 817536 |
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| End bp | 820388 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 642754212 |
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| Product | PAS sensor diguanylate cyclase and phophodiesterase |
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| Protein accession | YP_002125088 |
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| Protein GI | 196155599 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.464511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAGC AAGTCAAAAT CAGCTTAGAG GTCTTTTCTA CCGAGCGTAT TCAAGCCCTT
CACAACGTAA TGAGAAATTG GCCTACGTTT GAACCGAACC AGGTAGACTG GTTTAATGCC
CAAGCGCTTT CGCTTATGGG AATGCAAAAA GGATATTCAT CGCTAGCGTT TGTTAACGCG
AAGGGCAATA TAGAGTGGAT TGCTACCCCA AATTCAGGGG TTAAAACGCG ACTGGATAAC
CGTTTAGTTG GGGAACCGAT GAGCGAGTTA GGTCTGACTA TTTCCTCGAT GTCTGAAAAA
TTTGAAAGTA CGCTTATTTT TTCTCCTCAG ACTCAGCATC ATCATATTCT TATTGGCAGA
GCTATCAGCC CTCAAGAGCC GGAGCACGGG TATCTAATAG CAGGGTTCGA TGTTCAGTCT
ATTTTAGGCG TCATGTTAGG CGAGTTAGTG GGGCCCCAAT TTAACTTTAA GTTGGCGGCT
GACAATGCCA TATTATTTGA AAGCGGCGTA CTTGTTAACG ACGGCACACA AGTTTCACTC
GCGCCGTTTT CCTTCATTAC GCGTGATTTT ACCCTCTCTA TGCAATCTCA ACTGAGCCCC
TACAATACGG GTATGCTGGT TATCGTTATT GGTTTGATCA TGACTGCCTT GGTGAGTTAT
GTATTGCATA AGCAGCTAAA AGGGGCGGTG AGTTTATCAG ATAGCCAACA GAGGTATTTA
ACCGCTAGCG AGGCGTCTTT GGATGCGTTG TTGATATACC AACCGTCTGA TGAAGACTTT
GTGTTAGTAG AATCAAACTC CTACAGTCGA TACTTATTTC GAGGGGCCTG TGATGTTCTG
CACGCTATGA CGCTTTCTGA GCAAATGCGT TACCTAGAGC TTCATGACAT ACCCAAGCAT
GTGCAAAGTG TTGCAGAAAC TGGGGTGCCT TACGAGTCGC ACCTTCCTTT AACAAGCGAT
AAAGTTGCCC CTGAATGGCT TAAAATACAG GTGGTAAAAG CGGCAAATAA CATCGCGATT
ACAGTCAGAG ACGTAACTGA ACGTTTTAAA GCTCAGCAGG ATTTGAAACG CAGTGAGGAA
AAATACCGGC GTTTGGTCGA TGGTATGCAC CGACACTTTG TTTACACCAA AACGGTCGAT
CACACGTTTA TTTACGTAAG TGCGGGCCTT GAAAAAATAT TGGGATATGC TCAAGAAACG
TTTTGTAAAA ACGAGCCTAA ATACGTTCGC CAAGTTCCCG ATGAAACTTT TGAAATCCGC
GAAATAATAG CAAGAGGAAA CAAGCCCGAG CCCTATCTGG TTCACTATCA AAGTAGCGGT
GGCAAATCCG TAGTGCTGGA GTTCTCCGAT ACGCCAATAT TAGATGACGC GGGCGCATTA
ATTGCCATTG AAGGTATTGC CCGCGATGTA ACAAAAGAGT TGGTGTTACA GGAGGAAGTG
TTTTTTCAAG CGAATCACGA TCAGCTGACA GGGTTACTCA ACCGTTACGC GTTCGATGCG
CAATTACGCG AAATTTTACT ACATACCAAT GACAGCGCTG AGTACACCCC ATTCAGTGTT
ACCGGTAAAA GCGGTGGCAT AAATAGCAAA ACCAATGTGA CGGCAATTAA TCTACACAGG
GAGCCTGCAA AGCCTAGCGT TATGTGTTTT ATCGACATGG ACCGTTTTAA ATTGGTTAAC
GATAGCTGTG GGCACCCGGC GGGCGACAAG TTACTAAAAG AGATATCGAC TATTTTTAGG
CAATTTGTAA ATGGCCAAGA TTTACTGGCT CGCATAGGAG GCGACGAGTT CTGCATTATA
TTTCGTAACC AAAGTTTGGA TGAGGTTACC CAGTGTTTAG ATAAACTTTT GCTTGCCGTT
TCAAATTACC GCTTCGTATA TGACGATAAA CTCTTTTTCG TTGGTGCCAG CATTGGTGTA
ATAGAAATAA ACGAAAGTAC TCAAAGCGCT GAAGCATTGA TTAAGGCAGC AGATAATGCC
TGTTATAAAG CCAAGCACCT TGGGCGCAAT CGCTACTTTG TGTTCCGAGA AAACGACAGT
CAAATGGCGA TAGACGACAG TGAAAACCAA GTATTGCATG CACTGCATAA AGCACTGCAA
CACGACGGGT TCGAGTTGTA TAGCCAGGCG ATTATGCCGC TTACAGTGCC GCAAGAAGAG
CAAGGTGCTC ACTTACAGCA TTATGAAATT TTACTTCGTT TAAACTCTAA AGAGAGTGGG
CTTATTAGCC CCGGGTTATT CATACCTTTA GCAGAACGCC ACGGGTTGAT GAACAAAGTG
GATTTATGGG TTGTCGATAA CACCTTAAAA ACGTTGGAAA GCAACCCTGC GCATATCGAC
AATGTAGGTA AGGTAGCGAT TAATCTGTCG GGGATCACGC TTGGCGATGA AATGGCGCTG
CATAAAATCG CGCAGCGAAT GCAAAGTACC ACGGTACCCG CCGAAAAAAT ATGTTTTGAA
ATAACCGAAA CAACCGCGGT AACTAACTTA AATGCGGCAA AACATTTTAT TTCTACATTA
CGTGATATCG GGTGTAGCTT TGCCCTTGAT GACTTCGGCG CGGGTATGTC CTCCTTCACG
TATTTAAAGA ACTTAGACGT GGATTACGTC AAAATTGACG GGTCCTTTGT TCGAAATATC
GTTCACGATC CTATTGATCA TGCTACAGTA ACGGCAATTA ATAACATTGC GCACAGCATG
GGTAAGCAAA CCGTTGCTGA GTTTGTGGTG GACAATGCGA CAGCAGAAGT ACTGCGAAAG
CTGAAGGTCG ATTATGGCCA AGGTTTTGCT TTGGATAAAC CCAAACCACT GGCGCATAGA
GTTCAATGGC GAGTAAAGCT TGCCTCTGCC TAA
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| Protein sequence | MAEQVKISLE VFSTERIQAL HNVMRNWPTF EPNQVDWFNA QALSLMGMQK GYSSLAFVNA
KGNIEWIATP NSGVKTRLDN RLVGEPMSEL GLTISSMSEK FESTLIFSPQ TQHHHILIGR
AISPQEPEHG YLIAGFDVQS ILGVMLGELV GPQFNFKLAA DNAILFESGV LVNDGTQVSL
APFSFITRDF TLSMQSQLSP YNTGMLVIVI GLIMTALVSY VLHKQLKGAV SLSDSQQRYL
TASEASLDAL LIYQPSDEDF VLVESNSYSR YLFRGACDVL HAMTLSEQMR YLELHDIPKH
VQSVAETGVP YESHLPLTSD KVAPEWLKIQ VVKAANNIAI TVRDVTERFK AQQDLKRSEE
KYRRLVDGMH RHFVYTKTVD HTFIYVSAGL EKILGYAQET FCKNEPKYVR QVPDETFEIR
EIIARGNKPE PYLVHYQSSG GKSVVLEFSD TPILDDAGAL IAIEGIARDV TKELVLQEEV
FFQANHDQLT GLLNRYAFDA QLREILLHTN DSAEYTPFSV TGKSGGINSK TNVTAINLHR
EPAKPSVMCF IDMDRFKLVN DSCGHPAGDK LLKEISTIFR QFVNGQDLLA RIGGDEFCII
FRNQSLDEVT QCLDKLLLAV SNYRFVYDDK LFFVGASIGV IEINESTQSA EALIKAADNA
CYKAKHLGRN RYFVFRENDS QMAIDDSENQ VLHALHKALQ HDGFELYSQA IMPLTVPQEE
QGAHLQHYEI LLRLNSKESG LISPGLFIPL AERHGLMNKV DLWVVDNTLK TLESNPAHID
NVGKVAINLS GITLGDEMAL HKIAQRMQST TVPAEKICFE ITETTAVTNL NAAKHFISTL
RDIGCSFALD DFGAGMSSFT YLKNLDVDYV KIDGSFVRNI VHDPIDHATV TAINNIAHSM
GKQTVAEFVV DNATAEVLRK LKVDYGQGFA LDKPKPLAHR VQWRVKLASA
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