| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00726 |
|---|
| Symbol | |
|---|
| ID | 6777643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 763786 |
|---|
| End bp | 764943 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642754160 |
|---|
| Product | TPR domain protein |
|---|
| Protein accession | YP_002125036 |
|---|
| Protein GI | 196155547 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTC GAATTCTTGT AACAATACTG TTTTGTTTTG TAGTTGGTGG GTGCACGTCT
ACTAATAACA ATCAGGCAGA TGCTACACCA ATATTATTAA ACGATAGCCT CTTTCCCTCT
TTTAGTTTGT TTCCCGTCGA GCCGCCCGAA GAGATTTTTT ACTTAGATGA AGACGCACAG
CAATTTGCAG AAAAAGCCGT GCATGAAAAA AGCATTTTAC AAAAAAATGT GAAAGGGTTA
GTAAAGGCCA TTTTCGATCA TTCTGACCGC GGGATGCTTT ATCGAAACAG TGCCAATACT
ACAGCAAATA CCACGTTTAA TAACCGCGCT GCCAATTGCC TTTCATTGTC TATTATGACT
CTGGCGTTAG CTGAACACGT TGGGCTTACC GCCACTTTTT ATGAAGTAGA TATCCCAGAG
TATTGGACTC GCCGTGAAGG ATTTAGCTTG CTTAACGGGC ATATTAATTT GCGTATTTCA
CTACCTAATG AAAGCCCTGT AGCCTCGGTT GGCGGAACGT GGGCAGATGT AGATTTCGAC
CCTCAAATGT TACGCAATTA CTTCCCAAGA AAGGCAGTAT CGAGAGACAA GGTTATAGCT
ATGTTTTACA ACAATAAGGG CGCTGACGCT TTAGTGGCGA ACAGTTATAC CCGAGCCTAC
AGCTATTTTA GAGCCGCAGC CAAAATCTCC CCTGCGTTAC AGCAGACCTG GGTAAATTTG
GGCGTTTTGT ACCGAATGGT TGATGAGTAC GAGCAAGCTG AGTTGGCCTA CAAGCATGCG
TTAGCACTGG ACGATGAAAA CTTAACGGCT TGGGAAAACT TATCGATTCT TTATACCTAT
CAAAATAAAG ATGATGCGGC CCTAAAGATA ACTCAAATGG TAGAGGCTAA ACGTAAAAAT
AACCCGTTTT ATCACTATAT CTTAGGTGAG CAGGCCTTCG AGGCTGGAAA AGCCGATGTG
GCAATAACCC ATTACGAGCG AGGGCTTAGG CTTGATAACG CACGTCATGA ACTATTGTTT
GGAATGGCAA AAGCATTTCA TGAGCTAGGT GATGTGAGTA AAGCAACGCG TTATCTTAAG
CACGCAGTTA AGCATTCTCC GAACGAGCAA GAAAAACAGC GTTATTCGTC TAAATTAGCG
TCGTTGGCTA GTCGCTAA
|
|---|
| Protein sequence | MNARILVTIL FCFVVGGCTS TNNNQADATP ILLNDSLFPS FSLFPVEPPE EIFYLDEDAQ
QFAEKAVHEK SILQKNVKGL VKAIFDHSDR GMLYRNSANT TANTTFNNRA ANCLSLSIMT
LALAEHVGLT ATFYEVDIPE YWTRREGFSL LNGHINLRIS LPNESPVASV GGTWADVDFD
PQMLRNYFPR KAVSRDKVIA MFYNNKGADA LVANSYTRAY SYFRAAAKIS PALQQTWVNL
GVLYRMVDEY EQAELAYKHA LALDDENLTA WENLSILYTY QNKDDAALKI TQMVEAKRKN
NPFYHYILGE QAFEAGKADV AITHYERGLR LDNARHELLF GMAKAFHELG DVSKATRYLK
HAVKHSPNEQ EKQRYSSKLA SLASR
|
|---|
| |