| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00697 |
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| Symbol | |
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| ID | 6777420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 727093 |
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| End bp | 731265 |
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| Gene Length | 4173 bp |
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| Protein Length | 1390 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642754131 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002125007 |
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| Protein GI | 196155518 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGACT TATTAAAGTT TCTAAAGCAA CAAAACAAGA CTGAAGAATT CGATAATATT
CGAATCGGTC TGTCTTCACC TGACATGATT CGTTCATGGT CATTCGGTGA AGTTAAAAAG
CCTGAAACAA TTAACTACCG TACGTTCAAG CCTGAGCGTG ACGGTCTGTT CTGTGCGCGT
ATCTTCGGTC CGGTAAAAGA CTATGAATGT CTTTGCGGCA AGTACAAGCG CCTTAAGCAC
CGTGGTGTTA TCTGTGAGAA GTGTGGCGTT GAAGTTACAC TGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATCGAGCT AGCTAGCCCG GTTGCACACA TCTGGTTCCT TAAATCACTT
CCGTCTCGTA TCGGCTTAAT GCTTGATATG ACACTTCGTG ATATCGAACG CGTACTTTAC
TTTGAATCAT ACGTGGTAAC AGAGCCAGGT ATGACGACCC TTGAGCGCAG CCAACTTCTT
AACGAAGAAG AGTACTTGGA TGCACTTGAA GAGCACGGTG ATGAGTTTGA TGCGAAGATG
GGTGCTGAAG CAGTATTCGA TCTTCTAACA GTACTTGACG TAGACGCAGA CGTTGCGGCT
ATGCGTGAAG AGCTGCCTTC AATCAACTCT GAAACGAAGC GTAAGAAAAT TACTAAGCGT
CTTAAGTTGC TTGAGTCATT CCAGCAGTCT GGCAACAAGC CAGAGTGGAT GATTATGACG
GTACTTCCGG TACTTCCACC GGACCTTCGT CCTCTAGTTC CACTAGATGG CGGCCGTTTT
GCAACGTCTG ACCTTAACGA CCTATACCGT CGTGTAATTA ACCGTAACAA CCGTCTTAAG
CGTCTTCTAG ACCTAGCTGC TCCAGACATT ATCGTACGCA ACGAAAAGCG TATGCTTCAA
GAGTCTGTTG ATGCGCTTCT AGATAACGGA CGTCGTGGCC GTGCGATCAC TGGTTCTAAC
AAGCGTCCAC TTAAGTCGCT TGCAGACATG ATCAAGGGTA AGCAAGGTCG TTTCCGTCAA
AACCTTCTTG GTAAGCGTGT TGACTATTCT GGCCGTTCTG TAATTACCGT TGGTCCAACG
CTACGTCTTC ACCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTATT TAAGCCGTTT
ATCTACGGTA AGCTAGAAGG TCGTGGTCTT GCGACAACAA TTAAAGCAGC TAAGAAGCTT
GTAGAGCGCG AAGCACCAGA GGTTTGGGAC GTACTAGATG ACGTTATCCG CGAACACCCG
GTACTACTTA ACCGTGCACC TACACTTCAC CGTTTGGGTA TCCAAGCATT CGAACCTACA
CTAATCGAAG GTAAAGCGAT TCAGCTTCAC CCGCTAGTGT GTGCGGCGTA TAACGCCGAC
TTCGATGGTG ACCAAATGGC GGTACACGTA CCGTTGACGA TCGAAGCACA GCTAGAAGCA
CGTGCACTTA TGATGTCAAC GAACAACATC CTGTCGCCAG CGAACGGTGA GCCAATCATC
GTACCTTCAC AGGACGTTGT ATTAGGTCTT TATTACCTGA CGCGTGACAA AGTAAACGGC
TTAGGCGAAG GCATGGTATT TACCAGCCCG AATGAAGCAG AAAAAGCATA CCGTACAGGT
AATGCGGAGC TTCACTCACG CGTTAAAGTA CGTATTACTG AGTACGACAT CGATGAAGAT
GGCAACAAAA CTGAGAAAGT AACGCTTACT GACACTACTG TTGGTCGTGC AATTTTCTCA
TTGATCCTTC CAAAGGGTCT ACCGTTTGAA ATCATCAACC AAGCCATGGG TAAAAAGCAG
ATTTCAAGAC TATTGAATGC TTGCTACCGT ACGCTAGGCT TGAAAGATAC AGTAATTGCT
GCTGACCAAA TCATGTATAC CGGTTTCCAC TACGCGATGA TCGCGGGTGC GTCAGTTGGT
ATCGACGATA TGGTAATCCC TGCTGCTAAG AAAGAAATCA TCGACGCGGC AGAAGCAGAA
GTTATCGAAA TTCAGGAACA GTTCCAAAAC GGTCTTGTTA CCGCGGGTGA GCGTTACAAC
AAAGTTATCG ATATCTGGTC AAATGCCAAC GAAAAAGTTG CTAAGGCCAT GATGGATAAC
CTTAAGACTG ACATCGTAAT TAACCGCGAT GGCGAAGAAG AAGAGCAGCA ATCATTTAAC
TCTGTTTACA TGATGGCCGA CTCGGGTGCT CGTGGTAGTG CCGCTCAGAT TCGTCAGCTA
GCAGGTATGC GTGGTCTGAT GGCTAAGCCA GATGGCTCAA TCATCGAAAC CCCAATTACG
GCGAACTTCC GTGAAGGTCT GAACGTACTA CAGTACTTCA TCTCAACTCA CGGTGCGCGT
AAAGGTCTAG CGGATACCGC ACTTAAGACA GCTAACTCGG GTTACCTAAC ACGTCGTCTA
GTAGACGTTG CACAGGACTT GGTAATCACT AACGACGACT GTGGCACATT CGAAGGTGTT
CAAATGACAC CACTAATCGA AGGTGGTGAC GTTGTTGAAC CACTTCGCGA GCGTGTACTA
GGTCGTGTAG TTGCTGAAGA TGTTATTAAG CCTGGTACTG ATGAAGTATT GGTAGAGCGT
AATGTACTAC TAGACGAAGC GCTAGTAGAC ATGCTTGAAG CCAACTCTGT TGACCAAATC
CAAGTACGCT CTGTTATCAC GTGTGACAAC GACTTCGGTG TTTGTGCTAA GTGTTACGGT
CGTGACCTTG CACGCGGTCA CATGGTCGGT AGCGGTGAAT CGGTTGGTGT TATTGCAGCA
CAATCAATCG GTGAGCCAGG TACACAGCTT ACCATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCAAGAG CATCAGCAGA AAACAGCGTA CAAGTTAAAA CTGCGGGTAG CCTTAAGCTA
CACAACGCGA AATTCGTACG TAATTCTGAC GGCAAAGTGG TTATCGTTTC TCGCTCAACA
GAACTTACTG TTATCGATGA GCAAGGCCGC GAGAAAGAGC GCTATAAAGT ACCTTACGGT
GCAGTACTTA GCGTGGATGA CGGTGCAACT ATTGCAGCTG GCGACGTTGT TGCTAACTGG
GATCCGCATA GTCACCCAAT CATCACTGAA CGTGCAGCTA AGATTAGCTT CGCAGACATT
GATGACTCTA ACACAGAGAT GCAGCAAGAC GAGCTTACTG GTCTAACCCG TATCGTAGTT
AAAGACCTGG CTAAAGTTAA CTCTAAAGAG CCTAAGCTAA TTCTTGAAAG CGACGAGTTC
GGTCTTCAAG AAATTCGTCT TCCAAGCTTC ACAACGATTG AAGCGAAAGA AGGCAAAGTA
GCTAACGAAG GTGACGTGCT TGCACGTATT CCTCAGGAAA GCTCGAAGAC TCGTGATATC
ACCGGTGGTC TACCGCGCGT TGCGGACCTA TTTGAAGCAC GTAAGCCTAA AGAGCCTGCA
ATTCTTGCAG AAATCTCAGG TACTATCGGC TTCGGTAAAG AGACCAAAGG TAAGAAGCGT
CTTGTAATTA CACCAGCTGA AGGTGATGCA TACGAAGAGA TGATTCCTAA GTGGCGTCAG
CTTAACGTGT TCGAAGGTGA GAAAGTGGAA AAAGGCGAAG TTATCGCCGA CGGTCCAGAG
TCTCCACACG ATATCCTGCG TCTACGTGGT ATCTCAGCAG TAGCAAACTA CATCGTGAAC
GAAGTTCAGG AAGTATACCG TCTACAGGGT GTTAAGATTA ACGATAAACA CATCGAAGTA
GTTATCCGTC AGATGCTACG TAAGTGTGTT ATCACTAGTC CTGGCGATAC GCAGTTCCTT
GAAGGCGAAC AGGTTGAAGT ATCGAACGTT AAAGTGGCGA ACCGTGAAAT TGAAAAACTC
GGTAAGATTC CAGCGCAGTA CGAAACACAG CTGCTTGGTA TCACTAAAGC GTCACTGTCT
ACTGAGTCAT TTATCTCAGC AGCATCGTTC CAAGAAACAA CCCGTGTGCT AACTGAAGCT
GCGGTTCAAG GTAAAGAAGA TGACCTACGC GGTCTGAAAG AAAACGTAAT CGTTGGTCGA
CTCATTCCAG CGGGTACCGG TTTCGCTTAC CACGAACGCC GCGCACAACG TCGCAAAGAG
CAAATCGAAG AAATGTCGGT ATCTGCCGCT GATGCAGAAC AGGCACTAAC CGAAGCGCTT
AATGCCGGTG CAGACGAAGA TACTGCCGAA TAA
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| Protein sequence | MKDLLKFLKQ QNKTEEFDNI RIGLSSPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTLTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESYVVTEPG MTTLERSQLL NEEEYLDALE EHGDEFDAKM
GAEAVFDLLT VLDVDADVAA MREELPSINS ETKRKKITKR LKLLESFQQS GNKPEWMIMT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKL VEREAPEVWD VLDDVIREHP
VLLNRAPTLH RLGIQAFEPT LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTIEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYLTRDKVNG LGEGMVFTSP NEAEKAYRTG
NAELHSRVKV RITEYDIDED GNKTEKVTLT DTTVGRAIFS LILPKGLPFE IINQAMGKKQ
ISRLLNACYR TLGLKDTVIA ADQIMYTGFH YAMIAGASVG IDDMVIPAAK KEIIDAAEAE
VIEIQEQFQN GLVTAGERYN KVIDIWSNAN EKVAKAMMDN LKTDIVINRD GEEEEQQSFN
SVYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVIT NDDCGTFEGV QMTPLIEGGD VVEPLRERVL
GRVVAEDVIK PGTDEVLVER NVLLDEALVD MLEANSVDQI QVRSVITCDN DFGVCAKCYG
RDLARGHMVG SGESVGVIAA QSIGEPGTQL TMRTFHIGGA ASRASAENSV QVKTAGSLKL
HNAKFVRNSD GKVVIVSRST ELTVIDEQGR EKERYKVPYG AVLSVDDGAT IAAGDVVANW
DPHSHPIITE RAAKISFADI DDSNTEMQQD ELTGLTRIVV KDLAKVNSKE PKLILESDEF
GLQEIRLPSF TTIEAKEGKV ANEGDVLARI PQESSKTRDI TGGLPRVADL FEARKPKEPA
ILAEISGTIG FGKETKGKKR LVITPAEGDA YEEMIPKWRQ LNVFEGEKVE KGEVIADGPE
SPHDILRLRG ISAVANYIVN EVQEVYRLQG VKINDKHIEV VIRQMLRKCV ITSPGDTQFL
EGEQVEVSNV KVANREIEKL GKIPAQYETQ LLGITKASLS TESFISAASF QETTRVLTEA
AVQGKEDDLR GLKENVIVGR LIPAGTGFAY HERRAQRRKE QIEEMSVSAA DAEQALTEAL
NAGADEDTAE
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