| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00670 |
|---|
| Symbol | |
|---|
| ID | 6777313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 696196 |
|---|
| End bp | 698802 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642754105 |
|---|
| Product | ATP-dependent RNA helicase, DEAD/DEAH box family protein |
|---|
| Protein accession | YP_002124982 |
|---|
| Protein GI | 196155493 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC TTCCCGCGGC CTTTTCGAAA TGGTTTAAGC AAAAGGGCTG GCAATTACGC
GACTATCAGC AAACCATGCT GACAGAAAAA GACCAGCACG ACTGTACATT ATTAATAGCG
CCAACTGGAG CGGGCAAAAC CCTGTCCGGC TTTTTGCCTA GCCTAATCGA ACTTGCTGAG
ACATATGGTA TGAGTGAGCT TGCCGAGACG GTAGATGACG GGGCGCCAAT TGAGGTCTCT
GAAACGAGAC AGCTTTCTGG CTCGAGAGAA ACTGACGAAC ACGTCGAAAC AAAGGCTACA
GATAGACAGG CAAAGAAAGG AAAAGAAAAA GGTGGTTTCA ACGGCCTACA TACCCTTTAC
ATCTCGCCAC TTAAAGCACT CACGCAAGAT ATCCATCGTA ATTTGTTACA GCCTATTGAA
GAAATGGGGC TCCCGATAAC GGCTGAAACA CGTACTGGCG ATACGCCTTC GCACAAGCGC
CAGCGTCAAC GTAAAAAGCC GCCAAACATC CTGCTCACTA CCCCTGAATC GCTCATGCTC
ATGTTAAGCT ACGCCGATGC TGATAAACTA TTTGGTAAAC TCAAACGGGT TATTATCGAC
GAAACCCATA GCTTAATGGC AAACAAGCGC GGTGACTTTT TATCGTTAGC CCTTGCCCGA
TTAAGCGTAT TCTCTCCCCA TTGTAAACGC ATTGGTCTGT CTGCCACCGT AGCCTTTCCC
GAAACGTTGG GAGCGTGGCT GGCTGGTAGT GACAGTGTTG CCAATATCAT CAAAGTAAAA
GCGGGGGAGA AGCCGAAAGT CGAAATGCTG CATTCCAAAT CACGCATGCC CTTTGGCGGA
TTTATGGCAC GCTATGCTAT CGACGATATC TACCAAGCTA TTGAAAATGC CCAAACCACA
TTGGTTTTTG TTAATACCCG TGCCCAGTCT GAACTGCTAT TTCAAATGCT GTGGGAGGCA
AATAAAGCAG CGCTGCCCAT TGCGCTGTAT CACGGCAGTT TGAGTAAAGA GCAAAGACGC
AAAACCGAAG CCATGATGGC CAGCGGCATG CTGCGGGCCA TTGTATGTAC CTCGGCGCTA
GAGCTCGGTA TCGACTGGGG GGACGTAGAT AAGGTCATTC AGGTGGGCGC GCCGAAAGGT
GTGAGCAGGC TGTTGCAAAG AATAGGGCGG GCTAACCACA GGCTCGACGA ACCGAGCGAA
GCGCTACTAG TACCCGCAAA TCGCTTTGAA GCGCTGGAAT GCCAGGCAGC AATCACCGCT
ATTGAAAAAG GCGAGCTAGA TGGTGAAAGC CCACAGCCGG GCGCACTAGA TATTATTCCA
CAATTCATCT TGAACTGTTT GTGTAGCAAA GCTGATAGCC CTGATACCCT GTACCAGGAG
ATACTTACCG CCACGCCTTA TCAAGGGCTA GATAGAGATG ATTTCGATAA GCTATGGCAG
TTTACCCAAG ACGGCGGTAG TGCCCTTAAT GCTTATGAGC GGTATCAGCG CCTGGCAAGA
AATGATGATG GCACTTTCTC GCCAGCTAAT CGCCGCGTTA TTCAACGGCA CAGGCAGAAC
ATAGGTACTA TTGTTGAAGC GGGGCGACTT AAAGTAAAGC GTATTCGTAG GGGAAACCAA
GGTAAGATTA TCGGCGAAGT AGAAGAGTAT TTCGCTCAGC AATTAACGCC GGGAGACACC
TTTTATTTTG GCGGAGAAGT GCTGCGCTTT GAAGCTATTC GCGACATGCA GCTTCATGCG
AAGCCTGCAA AAGCCAAAGA GCCAAAAATA CCCAGCTACG CAGGTGGGCA GATGCCTTTG
TCTACTTATT TGGCTGAAGG AGTTCGCGCT ATTTTAGCGA CGCAAACGTT GTGGAAGACA
CTGCCCGCGC AAGTTCAAGA ATGGCTTAAA CTTCAGCAGG CGTTTTCTCA GTTACCTAGC
CCTGAAAAGG TGCTAGTGGA GCAATTTCCA TTCAGACAGG CGCACTACAC CTTGTACTAC
ACCTTCGACG GTCGCAAAGC GAATCAAACC TTAGGTATGT TGCTAACGCG ACGAATGGAG
AAAATGGGTA TCAAGCCTTT AAGCTTCAGC GTGACCGATT ATGGCTTGTC GGTGGCATCG
GTAAATCCAA TATCTCAAGT GCAACTGCAG CAGCTATTTC AGCCTGATAT TTTAGGTGAT
GAATTAGAAG ATTGGATGCT ACAAGCACCT ATGCTCAAGC GCTCTTTTAG GCAAGTGGCG
GTGGTAAGCG GCCTGACAGA GCAGCGTTAT CACGCCAGCC AAAAAACCAT GAAGCAGGTA
ACGTTTTCTA CCGACCTTAT TTACGATACA TTGCGTGAGC ACGACCGCGA CCATATTTTA
CTTAAAGTGG CCCGAGCTGA TGCAGAGCGT GAGCTACTGG ATTTACGACG ACTCGCTAAT
TTACTTATTC GCTACGTAGA TTCAGCGACG TTAGTGAACC TTGAAAAACC GTCGCCTATG
GCCATACCCA TTGTACTAGA TGTACGTAGC GAACAAGTGA AAGGCGCAGG GGCGCAGGCT
ATTATTGAGC AAGCTAATTT ATATGCCGAA GCTGAAACTA TGTTAGATGA AGTTCGTGCA
TTGCTATCAG GGGCTAGCGT CGACTAA
|
|---|
| Protein sequence | MTSLPAAFSK WFKQKGWQLR DYQQTMLTEK DQHDCTLLIA PTGAGKTLSG FLPSLIELAE
TYGMSELAET VDDGAPIEVS ETRQLSGSRE TDEHVETKAT DRQAKKGKEK GGFNGLHTLY
ISPLKALTQD IHRNLLQPIE EMGLPITAET RTGDTPSHKR QRQRKKPPNI LLTTPESLML
MLSYADADKL FGKLKRVIID ETHSLMANKR GDFLSLALAR LSVFSPHCKR IGLSATVAFP
ETLGAWLAGS DSVANIIKVK AGEKPKVEML HSKSRMPFGG FMARYAIDDI YQAIENAQTT
LVFVNTRAQS ELLFQMLWEA NKAALPIALY HGSLSKEQRR KTEAMMASGM LRAIVCTSAL
ELGIDWGDVD KVIQVGAPKG VSRLLQRIGR ANHRLDEPSE ALLVPANRFE ALECQAAITA
IEKGELDGES PQPGALDIIP QFILNCLCSK ADSPDTLYQE ILTATPYQGL DRDDFDKLWQ
FTQDGGSALN AYERYQRLAR NDDGTFSPAN RRVIQRHRQN IGTIVEAGRL KVKRIRRGNQ
GKIIGEVEEY FAQQLTPGDT FYFGGEVLRF EAIRDMQLHA KPAKAKEPKI PSYAGGQMPL
STYLAEGVRA ILATQTLWKT LPAQVQEWLK LQQAFSQLPS PEKVLVEQFP FRQAHYTLYY
TFDGRKANQT LGMLLTRRME KMGIKPLSFS VTDYGLSVAS VNPISQVQLQ QLFQPDILGD
ELEDWMLQAP MLKRSFRQVA VVSGLTEQRY HASQKTMKQV TFSTDLIYDT LREHDRDHIL
LKVARADAER ELLDLRRLAN LLIRYVDSAT LVNLEKPSPM AIPIVLDVRS EQVKGAGAQA
IIEQANLYAE AETMLDEVRA LLSGASVD
|
|---|
| |