Gene MADE_00649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00649 
Symbol 
ID6778827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp673323 
End bp673571 
Gene Length249 bp 
Protein Length82 aa 
Translation table11 
GC content41% 
IMG OID642754084 
ProductRNA-binding protein Hfq 
Protein accessionYP_002124961 
Protein GI196155472 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0803651 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAAG GGCAATCTTT ACAAGACCCA TTCTTAAACG CTTTGCGTAA GGAACGTATA 
CCAGTATCAA TTTATCTGGT AAACGGTATC AAACTTCAGG GGCAGGTTGA GTCATTCGAC
CAGTTCGTTA TTCTACTGAA GAACACAGTA AGCCAAATGG TGTATAAGCA CGCAATTTCT
ACTGTTGTTC CAGCACGCGC TATCACAATG CCAAGCGCAG GAGATTCTGA AAATACTAAA
GGTGAATAA
 
Protein sequence
MAKGQSLQDP FLNALRKERI PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS 
TVVPARAITM PSAGDSENTK GE