| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00593 |
|---|
| Symbol | |
|---|
| ID | 6776848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 629261 |
|---|
| End bp | 630331 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642754028 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002124905 |
|---|
| Protein GI | 196155416 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.863063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACAG AAAAATTATC AGACACTACA CAGGTATCGC TAATTGATAC TGTGTTAAGT
GCGCTACTTC CATTTGCTCC TTTGCTCATT GCTATCGCTT TGGTGATAAG TGCGCTCATT
GCACTGCATT ATCTTTTGCT GGCAAAACAG GGCCACCTTA CCAGTGAACA AAAACTGCCC
CGCCAAGTAG GAATGTTGGT ACTTACTATC GTTGGAGCTG TTATAATTGC GATGACCCTT
CCTGTAAGTG AAAGCACACG AAATCAAGTG ATCGCGCTTA TTGGCGTACT AATTTCAGGG
GTAATTGCGT TTTCTTCCAC CACCATGGTG GGAAATTTGA TGGCCGGAAT AGTACTTCGT
GTTAACCGCC CATTTAAAGT GGGAGACTTT ATCAAGGTAG AAGGCTATAG CGGACGCGTT
ACCGAAATGG GTCTGCTGGA TGTTGAAATT CAAACCGAAA GCAGAGAGCT TATTGCCTTT
TCCAATACGC TGATGGTGAA TTCGCCGGTC TCGGTTACTC GCGCCTCTGG CGCAATCGTT
AGCGTAGATA TTAGTTTAGG CTACGACATA CATCACAGTA TTATCGAAAA GCACCTGCTT
ATTGCGGCAG AAAATGCCAA ATTGTCAGAG TCATTTGTGC AGGTGGTGGG GTTGGGCGAT
TTTTCGGTAA GTTATCGTAT TTCTGGTTTA CTTACCGAAG TGAAAAGCTT GCTAAGCGCT
CGTTCAAGGC TGCATAAAGC CGTACTCGAT GCACTGCATA ATTCTGACAT TGAAATTGTG
TCGCCCAGCT TTATGAATCA GCGCCCTCAG CCTGATGGTT TGAAGATGAT AGCTAAATCC
CCTAGCCAAA CTAAACAAGA GGAAACGTCT CCTGAAGACG TTATTTTTGA CAAAGCTGAA
GAGGCAGAGC AAAAAGAAAA GAGTAAAGAA ACGCTGATGA AGAAAATTGC CGATATTGAT
GCAAAGATTG CAGAAAGTGA CAGTGAAAGA AGGGATGAGC TTAAGCATCA AAAAGCCACA
GCTGAAGCTG AGCTTACTAT TTTGGTTGAA ACAAAAAATG ACGATGGTTA G
|
|---|
| Protein sequence | MDTEKLSDTT QVSLIDTVLS ALLPFAPLLI AIALVISALI ALHYLLLAKQ GHLTSEQKLP
RQVGMLVLTI VGAVIIAMTL PVSESTRNQV IALIGVLISG VIAFSSTTMV GNLMAGIVLR
VNRPFKVGDF IKVEGYSGRV TEMGLLDVEI QTESRELIAF SNTLMVNSPV SVTRASGAIV
SVDISLGYDI HHSIIEKHLL IAAENAKLSE SFVQVVGLGD FSVSYRISGL LTEVKSLLSA
RSRLHKAVLD ALHNSDIEIV SPSFMNQRPQ PDGLKMIAKS PSQTKQEETS PEDVIFDKAE
EAEQKEKSKE TLMKKIADID AKIAESDSER RDELKHQKAT AEAELTILVE TKNDDG
|
|---|
| |