Gene MADE_00565 details

Gene Information

• Locus tag: MADE_00565
• ID: 6777181
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 595540
• End bp: 597426
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 642753999
• Product: Signaling protein with a acyltransferase and GGDEF domains
• Protein accession: YP_002124877
• Protein GI: 196155388
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAAGCGA TGCGCAAATA TGATGCGGGT CTCGTATTGA TAACGATAGT CGCCGTTGTT 
GGCTTTATAT CCGTGCTGCT TAACCTTTCT CCTTTTTCGA ATACTACACC GAAATATTCA 
CAGCTTACCT ATTTGCAAGA AGGCGACGAG GAACCTCTAG ATTTCGCGAA TGTGTCGCAA 
AAGCCCATGA GTGATTGGCG CCCTGTTGCG TCCCCTGTTA ATTTGGGAAT GGACAGCAAT 
GTACATTGGT TTTCAATGGT GGTTTCACCA ACCCAAACCT CTGAAAGCCG TTTTTTGCTT 
CATATTGATT ACCCATTATT AGATCACCTT GATGTTGCCG TATACAGCCA AATTGGCAGT 
AAACCTATAG TTACGTTTAC TGGCGGTGAC GCAATACCGT TTGTTAACCG CCCGGTTTCA 
CACGTAAAAC CATTGTTTCC GCTTCCTGAA AGTCTGCACT CCCAGCGAAT TATCATTCGT 
GTTCAAACTT CCGGAACAAT AAGGTTACCC ATTCGGATAT GGGAAGAAGC AGAATTTATT 
TCCTATACCT CAAGTAGAAA TCTAGCGTTG GGAATCTTTT TTGGAATTCT CCTCGCAATG 
GGGGTCAGTA ACGCTTTTTT AACGATTACG ACGAGTAATA CGTCCTTTCT ATTTTACTCG 
GGTTATATTG TTAGTTTAGC GCTAACGTTG GCAACGCTTC ACGGCTATGG TTTGGCCTAT 
TTATGGCCAG ACAGTACGTG GTTTCAGTCA AAAGCGATTA TTGTTTTTGC TAATGCAACT 
ATCATGTTCG CTACAATGTT TACGCGAAGG CTCTTGCCCA TTACAACCTA TAGTAAAAAG 
GCTGACAAAG TCGCTCAAAC GATAAGTTGG GTTTGTGGTG TGAGTATCCT CGCGGGCCTA 
ATTTTTCCCT ATTCACTTAT GGTGAAAGCG TTTTTACTGC TACTTACCCT TACCATAATT 
TTTACTATGT GGTTGGGCGT CTGGTTAACC CTGAAAGGGG TAGTGGTTGC CCGTTATTTT 
ACTATCGCCT GGGGGTTTTT ATTAGTTAGT GGTTTAAGTG CTAACTTAGA TAACGTAAAC 
ATTATTCAGC TGCCTATTTC CTCAAACAAC TTACTGATTA TTGGCGGGGC TGTAGAGTCA 
TTAATTTTGG CGCTCATTCT CGCGATTAAT TACAGCCACA GTCGCGACGA TTTAATAGAC 
GCGCAGCAGT TTGCGCTTGA ACAGGAAAAA CAGGCTAGTA CCGCGAAAGA AAGCCTGCTT 
GAAGTGCAAA AGCGCTACCA AGACGACTTG GAATATAAAG TTGAAGAGCG CACGCTAGAA 
CTTGAAATTA CGCTTCGAGA GCTTTCTGAA GTCAATCAAG AGCTTGAAAG ACTCAATGCC 
ATAGACCCGC TCACTGGGGC TCACAACCGC AGGCATTTTG ATAAGCGCTT ACGTTCAGAA 
GGTAGGCGCA GCCGTCGGGA ACAAACACCA CTGTCACTTG TTATTATCGA CGTCGATCAC 
TTCAAAAAAA TCAATGACGA ATATGGGCAT GATGGGGGAG ATGAGTGTTT AATTCATGTA 
ACGAAAGTAT TTCAACAACA CATCCATCGC CCTACAGATG ACTTGTGTCG CATAGGTGGT 
GAAGAGTTTG CCATTATCCT GCCTAATACC GATTTAGAAG GGGCTTTTCA TGTTGCTGAA 
AACATGCGAA GCAGTCTTGA AGCATCGCCC CTTGAATACG AAAACGAAAT GATTAACCTA 
ACCGCCAGTG CCGGCGTATC TACCACAGTA ATTGTGGGTG AAGATCACAC GCAGCAATTG 
TTTAAGTTCA CTGATGAGCT TTTATATGAA GCAAAAGCGG CAGGGCGTAA TAAAGTAATA 
CATAAACAAT TACAGGAAAA ATTATGA 

 

Protein sequence

MKAMRKYDAG LVLITIVAVV GFISVLLNLS PFSNTTPKYS QLTYLQEGDE EPLDFANVSQ 
KPMSDWRPVA SPVNLGMDSN VHWFSMVVSP TQTSESRFLL HIDYPLLDHL DVAVYSQIGS 
KPIVTFTGGD AIPFVNRPVS HVKPLFPLPE SLHSQRIIIR VQTSGTIRLP IRIWEEAEFI 
SYTSSRNLAL GIFFGILLAM GVSNAFLTIT TSNTSFLFYS GYIVSLALTL ATLHGYGLAY 
LWPDSTWFQS KAIIVFANAT IMFATMFTRR LLPITTYSKK ADKVAQTISW VCGVSILAGL 
IFPYSLMVKA FLLLLTLTII FTMWLGVWLT LKGVVVARYF TIAWGFLLVS GLSANLDNVN 
IIQLPISSNN LLIIGGAVES LILALILAIN YSHSRDDLID AQQFALEQEK QASTAKESLL 
EVQKRYQDDL EYKVEERTLE LEITLRELSE VNQELERLNA IDPLTGAHNR RHFDKRLRSE 
GRRSRREQTP LSLVIIDVDH FKKINDEYGH DGGDECLIHV TKVFQQHIHR PTDDLCRIGG 
EEFAIILPNT DLEGAFHVAE NMRSSLEASP LEYENEMINL TASAGVSTTV IVGEDHTQQL 
FKFTDELLYE AKAAGRNKVI HKQLQEKL