Gene MADE_00513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00513 
Symbol 
ID6777374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp544299 
End bp544910 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content44% 
IMG OID642753945 
Producttype IV pilus biogenesis protein PilO 
Protein accessionYP_002124825 
Protein GI196155336 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTTG ACGTTTCTAA ACTAAAAGAA TTAAACGAAC TCGATTTTGA ACAAATCGCG 
ATATGGCCCC ATGAGGTACG TATTGTAGTT GCCGCTTTTG TGGCGATTTT GGTGGGCGCG 
TTAAGCTATT ACCTGCTAAT CAGCCCCAAG CTACCAATAC AAGATGCGGC CGAGCTAAAA 
GAGCAAGAGC TAAAACTACA GTTCGAAGCG AAATATCGTA TTGCTGCTAA TCTAGATGCC 
TATGAAGCGC AGCTAAAACA AATAAGAGAA GATTTCTCTT CTATGCTTAA AAGCTTGCCC 
ACGAGTAATG AAACGCCTGG GCTACTTGAC GATATTACTT ACGTGGGCAC AGCATCAGGC 
CTTACATTTG AGCTTCTTAA CTGGCAACAG GAAGTACCCA AAGAATTCTA CACCGAGCTT 
CCCATTGAAA TGGAAGTCAG TGGTGGCTAT CACAACTTTG GCGAGTTTGT TGCGAAGGTG 
GCAGATTTAC CGAGAATCGT AACCCTTCAT GATTTCGAAA TTAAGCGACA GCCAAACGGC 
CTATCGCTTA AACTTCAGGC GAAGACTTAT CGCTCCGAAA GCGCCTCAGA ACTTGAAGGA 
GATGAAAAAT GA
 
Protein sequence
MKFDVSKLKE LNELDFEQIA IWPHEVRIVV AAFVAILVGA LSYYLLISPK LPIQDAAELK 
EQELKLQFEA KYRIAANLDA YEAQLKQIRE DFSSMLKSLP TSNETPGLLD DITYVGTASG 
LTFELLNWQQ EVPKEFYTEL PIEMEVSGGY HNFGEFVAKV ADLPRIVTLH DFEIKRQPNG 
LSLKLQAKTY RSESASELEG DEK