| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00434 |
|---|
| Symbol | |
|---|
| ID | 6777967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 451506 |
|---|
| End bp | 453191 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642753863 |
|---|
| Product | oxidoreductase |
|---|
| Protein accession | YP_002124746 |
|---|
| Protein GI | 196155257 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGTA ACGAATATGA TGCAATAGTT ATTGGATCTG GTATCAGTGG CGGTTGGGCT
GCTAAGGAGC TAACTGAAAA GGGCCTAAAA GTGCTAATGT TAGAACGTGG CCAAAATATC
GAGCATATTA AAGATTATAA AAATGCGCAT AAAGAGGATT GGGATTTTCC TCACCGAGAT
CTGCCTACTC AGGCTATGAA AGTTGACTAC CCTGTGCTTA AGCGTGATTA CCCGCTAAAT
GAAAAAACGT ACGGCATGTG GGCAAATGAA AAAGAAAATC CTTATACCGA AGACAAGCGC
TTCGACTGGT ACAGAGGCTA CCACGTGGGT GGGCGCTCAC TGTTGTGGGG GCGTCAAAGC
TACCGTTTGA ACAAAGAAGA TTTCGAAGCC AATGCTAAAG AAGGCATTGC AGTCGACTGG
CCTATTCGCT ACGACGATTT GGCGCCATGG TATGACTACG TAGAAAAATT CGCGGGTATC
AGTGGTAATC GCGATGGCTT AGATGTATTG CCTGATGGTG TATACCAGCC ACCAATGCCA
ATGAACATTG TAGAGGAAAG TGTCGCGGCG CGGGTGAAAA AGGCCTATGA AGGCGCGCGG
CACATGGTGC ATGGCCGCAC TTCAAACATG ACACAAAGCA AGCCCGAAGA AGGGCGTGTT
CATTGCCAAT ACCGCAATAA GTGCTGGTTG GGTTGTCCTT TCGGTGGCTA CTTCAGTACA
CAAGCATCTA CGCTTCCAGC TGCGGTTAAA ACAGGTAACT TAACCCTTCG ACCTTTTTCG
ATAGTCAAAG AGATCTTGTT CGACAAAGAC AAGAAACGCG CGACTGGCGT TGAAATTATC
GATGCTGAAA CCAACGAGAC CTATGTATTT AAAAGCAAGA TCATCTTTGT AAATGCGTCA
GCACTTAACT CGGCGTGGGT ACTGATGAAT TCCGCCACAG ACGTATGGGA CGGTGGCTTA
GGAAGCAGCA GCGGCGAGTT GGGTCACAAC GTTATGGATC ACCACTTTAG AGTCGGAGCT
TCAGCTGAAG TTGAAGGTTT TGACGACAAA TATACCTACG GTCGCAGACC GAGTGGCTTC
TATGTGCCAA GGTTTAGAAA CTGGGGAAGT GATAAACGAG ATTACTTGCG AGGATTTGGT
TATCAAGGCG GCGCAAGCCG TTCAGGTTGG CGCAAAGACA TAGCTGAGCT TGGTATAGGT
GCTGGACTTA AAGACGCATT AACAGAGCCA GGTCCTTGGA CAATAGGCAT GACAGCCTTC
GGAGAAATTC TTCCGTATCA CGAAAACAAA GTGTACTTGA ATAAAAAAGT CACCGACAAA
TGGGGCTTAC CAGTACTCGC AATGGATGTA GAGATTAAAG AAAACGAGCT TAAGATGCGT
AAGGACATGC AGCAAGACGC TATTGAGATG TTTGAAGCGG CTGGCCTTAA AAATGTTCAA
GGCTGGGATG CAGACTACGC ACCGGGTATG GGCATTCATG AAATGGGTAC GGCGCGTATG
GGGAGAGATT CTAAAAGCTC TGTGCTCAAC GCGCATAACC AAGTATGGGA TGCACCAAAC
GTATTCGTGA CCGATGGTGC AGCAATGACA TCGGCCAGCT GTGTTAACCC TTCACTGACC
TATATGGCAT TAACGGCAAG AGCCGCAGAC TTTGCCGTAG AAGAGTTAAA GCGAGGAAAT
CTATAA
|
|---|
| Protein sequence | MASNEYDAIV IGSGISGGWA AKELTEKGLK VLMLERGQNI EHIKDYKNAH KEDWDFPHRD
LPTQAMKVDY PVLKRDYPLN EKTYGMWANE KENPYTEDKR FDWYRGYHVG GRSLLWGRQS
YRLNKEDFEA NAKEGIAVDW PIRYDDLAPW YDYVEKFAGI SGNRDGLDVL PDGVYQPPMP
MNIVEESVAA RVKKAYEGAR HMVHGRTSNM TQSKPEEGRV HCQYRNKCWL GCPFGGYFST
QASTLPAAVK TGNLTLRPFS IVKEILFDKD KKRATGVEII DAETNETYVF KSKIIFVNAS
ALNSAWVLMN SATDVWDGGL GSSSGELGHN VMDHHFRVGA SAEVEGFDDK YTYGRRPSGF
YVPRFRNWGS DKRDYLRGFG YQGGASRSGW RKDIAELGIG AGLKDALTEP GPWTIGMTAF
GEILPYHENK VYLNKKVTDK WGLPVLAMDV EIKENELKMR KDMQQDAIEM FEAAGLKNVQ
GWDADYAPGM GIHEMGTARM GRDSKSSVLN AHNQVWDAPN VFVTDGAAMT SASCVNPSLT
YMALTARAAD FAVEELKRGN L
|
|---|
| |