| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00277 |
|---|
| Symbol | |
|---|
| ID | 6775771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 302711 |
|---|
| End bp | 304393 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642753705 |
|---|
| Product | Signal transduction histidine kinase (contains HAMP domain) |
|---|
| Protein accession | YP_002124589 |
|---|
| Protein GI | 196155100 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACG CGGATGGACC TAACGCCAAA ACGGATATGA CAGATAAAGC CGTCAAGCTT
TCGATAAAAA GCCTTTTTCT TTGGGTGGTA ATGTCAATTA CCACTTTCTC CCTTGCGGTG
CTGTCTAGCC TTGCCGTTTA CACACAAATT AAAACCTACC GTCACGAACT TGAATCTAAT
GCGCTCATGC TTGCGAAACT TGTCGCCAGA AGCGCAGCGA CATACCTTTA CGACGAGACA
CCGGAACGTA TTGAAGCAGC CTTAAGCAAC CTTACTGCGG CCGAACACGT GCTAAACGCT
CATGTTTATA AGGCGCAAAA CAAGTCGTTA GCGCCTCAAA TTTTTGCTTC ATATAATAAA
GAAGGCCAGT TATTACTGGG TGGCAAAGAA AACCAGTTGT CAGCACTTTT TATGGCGCCT
CAACTGGCTG ATAACGGTAA GTACCTAGAG CTAAGCACCA AGGTGTTCGA CACAGAAACC
AACATCTCAT TAGGCTGGGT TTATTTAAGG GTATCGTCTG ACAACTTTAA TCAGCTTGTT
GGAAAGTCTA TTTGGCTTAA TTTGGCGGTA GCACTCGCGC TATTGGCCAT TAGTTTTTAT
TCGGCGGTGC GAATGCAGCG CATTGTTACC GGGCCTGTGG AAAATATAGC GAATTTCTTA
CAGCGTACTT CTCGGCAACG AGATTATTCC GCGCGAGCCA GCGGCTCGAC AATCAAAGAA
CTAGATATTC TTGCTGACGC CGTTAATGTC ATGCTGTATC GCATGCAGGA GTATATGCAA
AAGCAACGGG AAGCCGAAGA ACAGCATCGC AAGCTTAATG CTAGCCTTGA AGATATGGTT
AGCCATCGTA CCACTGCCTT AAAGGACGCT AATCAAGAGT TAATCCAAAC GCTAGAAAAG
CTTCACCAGT TCCAGCGCCA AATTGTACAA AATGAAAAAA TGGCGTCACT TGGTGATATG
GTGGCGGGGG TCGCTCATGA GGTAAACACC CCCATCGGTT TAGGCGTCAC TGCGTCGACC
ATGATGTTAG ACAGATTAGC CGTTATTCAA AAAGATTTTG AAAATAAAAC GCTAAAAGCG
AGCGCAATGA AGCGTTTTTT AGATGAGAGT AATGAAAACT TAAACATCAT TTATCGCAAT
TTGAACAGAG CTGCCGAGCT TATTAGCAGT TTTAAGCAAG TTGCAGTCGA TCAAACGTCA
GAAACTAGCC GAAGTTTTTG CGTTGTACAG CTAGTTAATG AGATACTACT GTCATTGCAG
CCTCGACTCA AAAAATTAAA ACACAACATC AACGTAAATT GCGACCCTAC CCTTAGCGTT
GAAACGAAGG CTGGCCCAAT AAACCAAATC TTGATTAACC TGATTATGAA TTCAGTTATT
CATGGGTTTG AATCTATGGA AAAAGGCACG ATTGATATTC GTGTCGAGTT GGTGAGTAAC
AATAAGCTCA AGCTTGTTTA TACCGATAAT GGTAAAGGCA TTCCCCCTGA AATTCGCAAG
CGAATATTCG ACCCCTTCGT GACAACAAAG CGTGGGCAAG GTGGTTCGGG ATTGGGGATG
CACTTGGTAT ACAACTTGGT AACGCAAGCC CTCAACGGTT CAATATCAAT TACCGGCGAA
GAAGGTGATG GCGTGGAATT TGTAATAATA TTCCCCGTTG TTAATGCGAA AACCTCAGAA
TAG
|
|---|
| Protein sequence | MDDADGPNAK TDMTDKAVKL SIKSLFLWVV MSITTFSLAV LSSLAVYTQI KTYRHELESN
ALMLAKLVAR SAATYLYDET PERIEAALSN LTAAEHVLNA HVYKAQNKSL APQIFASYNK
EGQLLLGGKE NQLSALFMAP QLADNGKYLE LSTKVFDTET NISLGWVYLR VSSDNFNQLV
GKSIWLNLAV ALALLAISFY SAVRMQRIVT GPVENIANFL QRTSRQRDYS ARASGSTIKE
LDILADAVNV MLYRMQEYMQ KQREAEEQHR KLNASLEDMV SHRTTALKDA NQELIQTLEK
LHQFQRQIVQ NEKMASLGDM VAGVAHEVNT PIGLGVTAST MMLDRLAVIQ KDFENKTLKA
SAMKRFLDES NENLNIIYRN LNRAAELISS FKQVAVDQTS ETSRSFCVVQ LVNEILLSLQ
PRLKKLKHNI NVNCDPTLSV ETKAGPINQI LINLIMNSVI HGFESMEKGT IDIRVELVSN
NKLKLVYTDN GKGIPPEIRK RIFDPFVTTK RGQGGSGLGM HLVYNLVTQA LNGSISITGE
EGDGVEFVII FPVVNAKTSE
|
|---|
| |