| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00260 |
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| Symbol | |
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| ID | 6776663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 278789 |
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| End bp | 279397 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642753688 |
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| Product | putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV) |
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| Protein accession | YP_002124572 |
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| Protein GI | 196155083 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGGGC AATTTATGCG TGCTAAGTTA CCTAAGTCAC AAACCGGTTT TACCTTGCTA
GAACTGGTGA TTGGTATTGT TGTATTTACC ATTAGCCTAA CTATTGTGCT GTCGCTTATT
GTTCCGCAGG CAGAACAAAC CGCAGAGCCA TTTCGCCAAG TAAAAGCAGC TAAGTTAGGT
CAGTCTTTAA TGAACGATAT TTTAAGCCGC TCTTATGATG AAAACAGCGA CCGAAGCCCG
CCTTTTGTCA CCTGCGTGGA TAAACCTGAT CCGTCTAATG CCAGCGATAA CTTGTGTTCC
GACGCTCTAG GCCCGGACGC CGGTGAAACC TCTGAAGAAG CTTATGACGA TGTGGATGAT
TATAACGGTT ATTCAATAAG TAATGCTGGC GGGAATTATA ATGGCTTTGC ATACAGAGTA
GATGTTATCT ATGACTCTTC AATAGATGTT ACTTCTGCTT TTCCAGCAGT TGTACATTGC
CCAGACCCGG AAGAGCCAAT TAATGCCTGC GTCCCTCCCG AGCAAAAACA ATATAAACGT
ATCGATATCG CAGTCACGGC TCCAGATGGC CAAGTTTACA CCTTCCGCGC GTATCGAGGG
AGCTATTAA
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| Protein sequence | MKGQFMRAKL PKSQTGFTLL ELVIGIVVFT ISLTIVLSLI VPQAEQTAEP FRQVKAAKLG
QSLMNDILSR SYDENSDRSP PFVTCVDKPD PSNASDNLCS DALGPDAGET SEEAYDDVDD
YNGYSISNAG GNYNGFAYRV DVIYDSSIDV TSAFPAVVHC PDPEEPINAC VPPEQKQYKR
IDIAVTAPDG QVYTFRAYRG SY
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