| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00251 |
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| Symbol | |
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| ID | 6776673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 269868 |
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| End bp | 271577 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642753679 |
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| Product | putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) |
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| Protein accession | YP_002124563 |
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| Protein GI | 196155074 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAGCGG CGCTTGTAGT AAGTGGTTGT CAAACTTACG GTGTTGGCGA GGAAGTGAAA
CCTCATATAC GTGACGAGTT AAACCGCTCG CAAAATAAGC CCACCGGTGT GCCAACGCCT
CCACCTCAGC TTAATCAGGA ATTGTTGTCG GAAGTTGCTC GTTATCAAGC GCTTCCAGCA
CCAACATCGC AAAAGACCTT TGCAGTGTCA GCGAATAACG TAGACGTGCG CCCCTTCTTT
GATGCGTTAG TGGAAGATAC ACCCTACAGC GTAGCGGTTC ACCCTGCGGT ATCTGGTCAA
ATTAGCCTAA CGCTAAAAGA GGTTGCCCTT GACGATGTAT TAACCATTAT TTCGAGAATG
TATCCGCTAG ATGTCTTCTT AGAAGGCAAG GTTATTCAAG TTATGCCGTC TCAATTAAAA
ACAGAGTCTA TTCCGGTTAA CTTTTTAATG ATCAAACGGT TTGGTGTATC AAACGTTAGC
GTTATCGCTG GTGGCGTAAG CGAACAAGAC CAAAATAACG GCGGCAATAA TGGCGGTGTC
AACGGTAACA ATAATATAAG CGGTAACTCA TTAGGTGGAC AAGGCGGTAT TGGCGGTCAA
GGTGGGCTTG GTGGCAACAA TATTCAGCAG CTTAATGGCT CTAACATACA AACCACCAGT
GAAAACGACT TTTGGAGCGA TTTAAAAGAA GCGCTTAAAG TACTGGTTTC ACCCACCGAA
GGTCGCCAAG TTGTGGTTTC TCCGCAGGCG GGGCTTGTTA CCATACGCGC ATTGCCAAGT
GAAATTGCGG TAGTGAAAGA CTTTTTAAAT CAAAGCCAAG AAAGCTTACA GCGCCAAGTG
GTGTTAGAAG CGCGCATTAT CGAAGTTACA CTTAATGATG GTTATCAACA AGGCGTGCGC
TGGGACCGAA TTGCTAGCGG TTTAACTGGC AGCGTCAATT TTGGTTTTAG CGGTGGCGCA
CTGGCGTCTA ATTTCGCCGC GAACACCGCT GCAGGCATCG ACCCTGCAAT CAATGCAGTT
AATGCCATTG GTAACACCAT TTCTACTGAT ATTGGCGGGG TCTCTACGTT GCGTATTTCC
CGTGGTGACT TCGACGGTGT TATAAACATG CTGCAAACCC AGGGTGATGT GCAGATGTTG
AGCAACCCTA GGGTCACGGT AACAAACAAC CAAAAAGCAG TGATTAAAGT AGGGCAAGAT
GAGTATTTTG TTACTGACGT TTCTACCAGC GAAGATCAGA GCACAACGAG TACTGAGAAC
GAAAACGATA TTGAGCTTAC CCCTTTCTTT TCAGGTATCG CACTTGATGT AACACCGCAA
ATAGATAGAA GCGGCTCGGT CATCCTGCAC GTTCATCCGT CAGTGACGGA AACGGCAGAG
CAAACTAAAG TGATTCAAGT GGGCGACCAG CAAATTTTAC TGCCCCTTGC ACAAAGTAAT
ATTCGCGAGT CAGATACAGT AATTCGTGCC CGCGATGGAG AGATAGTGGT TATCGGTGGG
TTAATGGAAA CCGTTACCAG CGAGCAAGAA TCTAAAACGC CTTTATTAGG CGACATCCCT
TTTATTGGTA ATGCCTTTAA GAACAAAGCG AAAACTCAAA GTAAGCGCGA ATTGGTTATA
TTAATTCGCC CTTCTGTAGT ACAGCCCGAC ACCTGGGAAA AGCAGCGCCT TCGCACCCAG
TCGTTACTTG ATCAATGGTA TAGAAACTAA
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| Protein sequence | MTAALVVSGC QTYGVGEEVK PHIRDELNRS QNKPTGVPTP PPQLNQELLS EVARYQALPA
PTSQKTFAVS ANNVDVRPFF DALVEDTPYS VAVHPAVSGQ ISLTLKEVAL DDVLTIISRM
YPLDVFLEGK VIQVMPSQLK TESIPVNFLM IKRFGVSNVS VIAGGVSEQD QNNGGNNGGV
NGNNNISGNS LGGQGGIGGQ GGLGGNNIQQ LNGSNIQTTS ENDFWSDLKE ALKVLVSPTE
GRQVVVSPQA GLVTIRALPS EIAVVKDFLN QSQESLQRQV VLEARIIEVT LNDGYQQGVR
WDRIASGLTG SVNFGFSGGA LASNFAANTA AGIDPAINAV NAIGNTISTD IGGVSTLRIS
RGDFDGVINM LQTQGDVQML SNPRVTVTNN QKAVIKVGQD EYFVTDVSTS EDQSTTSTEN
ENDIELTPFF SGIALDVTPQ IDRSGSVILH VHPSVTETAE QTKVIQVGDQ QILLPLAQSN
IRESDTVIRA RDGEIVVIGG LMETVTSEQE SKTPLLGDIP FIGNAFKNKA KTQSKRELVI
LIRPSVVQPD TWEKQRLRTQ SLLDQWYRN
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