Gene MADE_00229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00229 
Symbol 
ID6779210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp243556 
End bp244611 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content47% 
IMG OID642753657 
Productputative GalR repressor of contiguous operon, likely to bind a galactoside 
Protein accessionYP_002124541 
Protein GI196155052 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTATTA GGCCTAGTCG CCCCCATGCA ATAAAAACGA AGTTTGAAAA GAAAATGGCA 
ACAATAAAAG ATATAGCCCA AGCCGCTGGT GTCTCATTGG CTACCGTATC AAGGGTTATT
AATAATGGCC CGAAAGTGGG CAATGACACA CGCAAGCGCG TTAAAAAAAT CATGGAAGAA
ATGGGATATC GTCCCAACGC TAATGCGCGT GCGCTTGTAA CAAAACGCAG TGCGTCGCTA
GGTGTGGTCA TCGCTGAACT TCACGATCCG TTTTTTGCCA TGCTCGCCCA CGGCGTCGAG
TCGATAACGC GAAAGAACAA CGTTCAAATA TTGTTGAGCG CGGGCTCCAT AGAAAAAGAA
ACCGAACTTC GCGCTATTGA AACCTTGTTA GAACACCGCG TAGAAGCCAT GGTTGTTCAC
AGTAAAGCGC TAGATGATGA AACGCTTATC GGCTTTGCTA AACAAGTCCC TGGCTTTGTG
CTGATAAATA GATACATTCC TGAAATTGCA AATAGGTGCG TGTGGCTAGA TAACGTGACA
GGCGGCCGCC TTATGGCCGA ATATGCCATC AGTCAGGGTC ATAAGCATTT AGCAGTAATT
AGTAGCCAAT ATCGTATCGA CGACCCTAAC CACCGTTTAG AAGGTATTAG AAACGCTGTC
GACAACGCAA AGTTAAGTTT GACTGAGAGT ATGATTGAGT ATGCCACCCC CGATCAGGAG
GGCGGTGAAT TAGCGATGCA GAATTTGCTT GCCACAGGCG CCCAATTTAC TGCCGTGTTA
GCATACAACG ATGCAATGGC TTCAGGGGCG ATGACAATGC TGCAAGATCA TGGCATTTGT
GTGCCCGACC AAGTGTCGGT AATGGGTTAC GATGACGTAT TGCTCGCTAA ATACTGCCGA
CCTAAATTAA CCACGCTTCG ATACCCTGTG GAAATGATGG CAGCCAAAGC GGCTGAACTC
GCATTGAAAT ATGCATCGGG CAGTAAGCCA GAAGACGGCC TAACATTTAA ATATACCCCA
ACGGTAGTCA AACGCGACTC CATCATTCGA ATTTAA
 
Protein sequence
MSIRPSRPHA IKTKFEKKMA TIKDIAQAAG VSLATVSRVI NNGPKVGNDT RKRVKKIMEE 
MGYRPNANAR ALVTKRSASL GVVIAELHDP FFAMLAHGVE SITRKNNVQI LLSAGSIEKE
TELRAIETLL EHRVEAMVVH SKALDDETLI GFAKQVPGFV LINRYIPEIA NRCVWLDNVT
GGRLMAEYAI SQGHKHLAVI SSQYRIDDPN HRLEGIRNAV DNAKLSLTES MIEYATPDQE
GGELAMQNLL ATGAQFTAVL AYNDAMASGA MTMLQDHGIC VPDQVSVMGY DDVLLAKYCR
PKLTTLRYPV EMMAAKAAEL ALKYASGSKP EDGLTFKYTP TVVKRDSIIR I