Gene MADE_00151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00151 
Symbol 
ID6779131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp161999 
End bp163060 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content44% 
IMG OID642753579 
ProductResponse regulator containing a CheY-like receiver domain and a GGDEF domain 
Protein accessionYP_002124463 
Protein GI196154974 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.440614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACTACT CGTCGTTAGG GAAACTGTTA AGAAGCGCTC AACAAGACGA AGCGGAGGCA 
AAACGCAGAA GACTGACACT GTATTTTATT TCTTATGTTG GCGGCACCAT CATGGCCTTT 
ATGGCGTGGC TTAATGTGGG AAATAATACA CCGCTCCTTG TAGGAACCCT TACAGCCTCA 
GCAGCCGTTG TATACATAAA CGTGTTGTTG TCTCACATAT TCCCGCGAGT CGACGTGTTT 
TACTACGTTG GCGGCCTTGT TGCAATGTTT ACTGTTAACG GCTTGGTGTA TACCGGGGGA 
TTAAATAATA CCGGCCTTTA CTTTGTGTTT CCGCTGTTGT TCTTGCAGAT CATAGTGGTG 
CGTTTTAGGC CCGCGTTGAT TTATGTTTCG GTAACATTGG CCATCACTAC TTTTATGCTA 
TACAACCAAG AGAATATAAT TGCTCAGTAT TCCGATGAAC ACGTATCTCG CTTCCTAATC 
TCTACGCTTT GTTTTGTTTG TGTGGCCTTT ATTGGCGAAA ATTTTTGGCA TCAAAGCCGA 
AAGGAGATGT TGAAAGAAAA CTTTGAGCGT ATGCGCCAAG CCAATACCGA CCCGTTAACC 
AAACTGCCCA ACCGCCGTTT TCTAGAAGCC GTTTTTTTTG AAAAGGCCAT GCAAGACCCT 
GCTACATATT TTCCTTTAAG CGCGGTAGTG GTAGATATCG ATCACTTTAA AAAGATTAAC 
GATAGCTATG GTCACGATGT GGGCGATCAG GTGCTTATTC ATGTTACCAG TTTGATGAAA 
GAAGCGGTCA GATCTTCTGA TGTGGTAGCA CGCACTGGCG GTGAAGAATT TTTGGTGCTT 
TTTCCTCATG CTACGTTGAC GCAAGCGGTT AAGTTGGCTG AAACAATGAG GAGGCTAATA 
GAAGAAAGAC CTTTTGTAGC AGGAGACATT AATCACCCTA TCACCGCAAG TTTTGGTGTT 
GCCACAGCGT TAACCGATAC CAACCTACAT GCCAGTTTAA AACAGGCTGA TGATAACTTA 
TACAAAGCGA AAAATGCGGG CAGAAACCGC GTGATGGAAT GA
 
Protein sequence
MDYSSLGKLL RSAQQDEAEA KRRRLTLYFI SYVGGTIMAF MAWLNVGNNT PLLVGTLTAS 
AAVVYINVLL SHIFPRVDVF YYVGGLVAMF TVNGLVYTGG LNNTGLYFVF PLLFLQIIVV 
RFRPALIYVS VTLAITTFML YNQENIIAQY SDEHVSRFLI STLCFVCVAF IGENFWHQSR 
KEMLKENFER MRQANTDPLT KLPNRRFLEA VFFEKAMQDP ATYFPLSAVV VDIDHFKKIN 
DSYGHDVGDQ VLIHVTSLMK EAVRSSDVVA RTGGEEFLVL FPHATLTQAV KLAETMRRLI 
EERPFVAGDI NHPITASFGV ATALTDTNLH ASLKQADDNL YKAKNAGRNR VME