| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00085 |
|---|
| Symbol | |
|---|
| ID | 6775323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 86938 |
|---|
| End bp | 87390 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642753515 |
|---|
| Product | YhdE (NsrR) |
|---|
| Protein accession | YP_002124399 |
|---|
| Protein GI | 196154910 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA ATACTTTTAC CAATTTAGCG TTTCGCGTTT TGATCTATCT CGCGCTACGC
AAAAACCAAA CTGTAAAGAC AAGTGAAATA GCAGACGCGT ACTTTGTGTC TTTCAATCAC
TTAAAAAAGG TCATCACTTT GCTAATTGAC CAGGGATATA TCATTGGTAC GAAAGGGCGC
GGTGGCGGCA TTCGGTTGGC GAAAGAAGCC AACCTAATAA ACATAGGCGA GGTTTTTAGA
TTAACTATTG AAGATGTAGC GTTAGCTGAG TGTTTTGCAT CACCAACGAA TAAATGTGTT
ATTTCGCCCA CATGTCGCTT GAAGACAATT CTTCAGGACG CTGCGGATAA ATTTATAAGC
GAGCTTGATC AATTTACGCT TCATGATTTG GTAAAAGACA GAGAAGGTGC ATTAGCGATG
CACCTTGCCA TCGATTTTAT AGAAGTTGAG TAG
|
|---|
| Protein sequence | MKINTFTNLA FRVLIYLALR KNQTVKTSEI ADAYFVSFNH LKKVITLLID QGYIIGTKGR
GGGIRLAKEA NLINIGEVFR LTIEDVALAE CFASPTNKCV ISPTCRLKTI LQDAADKFIS
ELDQFTLHDL VKDREGALAM HLAIDFIEVE
|
|---|
| |