| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00077 |
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| Symbol | |
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| ID | 6779195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 79215 |
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| End bp | 81815 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642753506 |
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| Product | Intracellular signaling protein (GAF,GGDEF,EAL domains) |
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| Protein accession | YP_002124391 |
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| Protein GI | 196154902 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAG ATTCGACGCA ACACGAGTTG ACGGAAGAAG AACTGCGCGA ACTTATACCG
CAGCTTCAGC AACTCACCGA TAAATACAAG CGCGCTGAAC GTGTTCAGAA GGCGCTTTTT
GATATTTCCG AGCTTGCCAG TTCCGTAAGT CACCTCAATC GCCTTTATTC TGCCATTCAC
GAAATCATTG CTGATTTTAT GAATGCCGAC AACTTCTTTG TTGCCTTCTA CGAACCTGAA
AACCACGTTG TCGACTTCGC TTATTTTGTA GATGAATTCG ACGAGCAAAC GGTTCACCAA
TTGCCCGCCG AGTCGTTAAT GGATGGCATG ACGGGGTTCA TTCTTAGAAC CGGTAACCAC
CTTTTCTACA AACGTGCCGA AGAAGAAATT TTTGCGTCTG AACACGATAT TAAATTGGTG
GGTTCACAAC CCTATGAACT TTTAGGCGTA CCTTTAAAAC GAGGAAGCCA AGTTATCGGG
GCGATGGTGG TGCAAACCTA CGATGAGGGC GTGCATTACA CACAAGAAGA TTTAGAAGTT
TTGCTTTTTG TCTCTCAGCA CATTGTTACC ACCGTTGATA GAGTAAAGAA CCGAGAACTT
ACCGAAAGTA CCATCCGCGA ACGCACCCGC CAACTTCGAA AGATAAACGA CGACCTTCAA
GAAGAAATTT TAGAACGACA AAAAGTAGAG TCGCTACAGC AAGCACTTTT TGAAATTTCT
GAACTCGCCG CCAACCTTGA AGGGGATATG AATGCATTCT ATTCGAGCTT GCACGAGATT
TTGGCAAGGC TGATAAGCGC ACCTAACTGC TACATAGCCA TACACAATAA AGAAAAAGAC
CTTCTTGAGT TTCCTTATTT CAGCGATGCA AAGCAAGACC AGATTAATGC TAGGCCGCTT
GGTTTAGGGC TAACTGAGTT TGTATTGCGA ACTGGGCAAG CGGAGTTAAT AAACCCGCCT
AAAGTACTGG AGTTAGCTGA GTCTGGCGAT TTGGATGTGT CTGTTGCTCA GAACATGTTA
AACAGTGCGA ACTCGTGGCT GGGCTCTCCC CTAGTTGTAG ACGGCGAAAT TGCCGGGGTT
ATTGCCGTGC AAACTTACGG CAAACACGCA AAGTACAACG CCCGCGACCA AGAGCTTTTA
CGCTTTGTGT CGCATCATAT TGCTGTTGCC ATAGAGCGCA AGCGCAATAC CGAGTCGATG
CAGCGGTATA ACGTAGAGCT TGAAGAACGC GTAAAAGAAC GCACTGCCGA GCTTAACCGC
ACAAACAAAT TTCTAAAGCA GCAAATTGAA GAGCGTAAAG AGATTGAGCT GAAGCTTATT
CACGACGCCC ATCACGACTC GTTAACCGAC TTACCCAACC GCGCTATGTT TACCAGTCGC
TTAGAGCTTG CTATAGCAAG CAAGCAGCGC TACAGCGAAA ACATGTTTGC GGTTTTATTC
ATCGATTTAG ATCGCTTTAA AGTTATTAAC GACACCCTAG GCCATCATGC TGGCGACGAG
TTCTTAATTG AAGTCGCCCG TCGTATTGCT CTTTGTATTC GCGGGCACGA CCTGTTGGCC
CGTTTAGGCG GCGATGAGTT TGTGGTATTG CTCGACAATT TTGAAGATGA AGACGACGTT
GAAGAGGTGG CCAGCCGTAT TATTTCATCT ATCTCTGAAC CCTTCTTATT GGATGGCCGA
GAGATGTACT CCGGCGCTAG TGTAGGTATT GCACACATTG AAACCTATTA TCGCAGTGCC
GATGAAGTAC TACGTGATGC TGACGCCGCC ATGTATCAAG CGAAAACCCT TGGTCGCGGC
CGCTTTGTTA TGTTCGATAA GAGCATGCGC GACAGACTTA TTGAAGAGCT AGAACTTGAA
AATGAGTTTC GACGGGCGCT GCGTGAAGAA GAATTCGACT ACTTTTTGCA ACCTGTTATT
AAACTAGACG ATAAAAGTAC GCTATATAAA GAAATGTATG TTCGCTGGTC GCACCCAGCT
TACGGCAAAA TAGCCAGAGA ACAGTTTAGG CAAGTGGCTG AGCACAGCGG CTTAACGCTA
GATCTCGATT TATTTCAGCT AACCAAAGCT TGTGAACTCA TTAACTATTA TCAAGGCACC
GACGATCCTA TTAACAAGAT TGCGGTGAAT GTGTCGATTA ATCATTTGCT ACAGGCCTCA
ATGGTTAATC AAATGATTGA TGTTATCGAG TCGGCCGATA TAACGCCAAG CCAACTGGTG
TTTGAGTTTG ATGAGAACGA CTTAAACCGC CGTTCACAGT TTATTCTTCC CGCTATTAAA
AAGTTAAAAC GGGCTGGCGT CACCCTTGTG CTTGATAACT TTGGCAGCGG TTTAGCCTCA
CTTAGCTATC TGTTCGCCTA CCCCTTCGAT TTCATAAAGA TTGATCACCG CTTCGTTAAA
TCTATTCCTC GCTCGCAGCG CAATTTAAAA CTGATTCAGT CGGTAATGCT TATTTCGGAG
CACTTGAAGT TTCAGGTTAT TGCAGAGGGC GTAGATTCAC AGGCGCAGTT AGACGCGCTT
AATGAAATCG AATGCATTTA CGGTCAGGGC AAAATACTCA AGCACGCCAA AGTGCTGGAT
ATGACGTCGC TAGCTAGTTA A
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| Protein sequence | MSQDSTQHEL TEEELRELIP QLQQLTDKYK RAERVQKALF DISELASSVS HLNRLYSAIH
EIIADFMNAD NFFVAFYEPE NHVVDFAYFV DEFDEQTVHQ LPAESLMDGM TGFILRTGNH
LFYKRAEEEI FASEHDIKLV GSQPYELLGV PLKRGSQVIG AMVVQTYDEG VHYTQEDLEV
LLFVSQHIVT TVDRVKNREL TESTIRERTR QLRKINDDLQ EEILERQKVE SLQQALFEIS
ELAANLEGDM NAFYSSLHEI LARLISAPNC YIAIHNKEKD LLEFPYFSDA KQDQINARPL
GLGLTEFVLR TGQAELINPP KVLELAESGD LDVSVAQNML NSANSWLGSP LVVDGEIAGV
IAVQTYGKHA KYNARDQELL RFVSHHIAVA IERKRNTESM QRYNVELEER VKERTAELNR
TNKFLKQQIE ERKEIELKLI HDAHHDSLTD LPNRAMFTSR LELAIASKQR YSENMFAVLF
IDLDRFKVIN DTLGHHAGDE FLIEVARRIA LCIRGHDLLA RLGGDEFVVL LDNFEDEDDV
EEVASRIISS ISEPFLLDGR EMYSGASVGI AHIETYYRSA DEVLRDADAA MYQAKTLGRG
RFVMFDKSMR DRLIEELELE NEFRRALREE EFDYFLQPVI KLDDKSTLYK EMYVRWSHPA
YGKIAREQFR QVAEHSGLTL DLDLFQLTKA CELINYYQGT DDPINKIAVN VSINHLLQAS
MVNQMIDVIE SADITPSQLV FEFDENDLNR RSQFILPAIK KLKRAGVTLV LDNFGSGLAS
LSYLFAYPFD FIKIDHRFVK SIPRSQRNLK LIQSVMLISE HLKFQVIAEG VDSQAQLDAL
NEIECIYGQG KILKHAKVLD MTSLAS
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