Gene MADE_00049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00049 
Symbol 
ID6779001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp56307 
End bp56984 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID642753478 
ProductDNA repair protein RadC 
Protein accessionYP_002124363 
Protein GI196154874 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00103184 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGATAA AAGTATGGCC AAAAAGTGAA AGGCCAAGAG AAAAGCTATT GCAGTATGGT 
GCAGAGAACT TAAGTGATGC TGAGCTTATT GCCGTGTTAT TGGGTAAAGG AGTTAAAGGA 
AAAAACGCAG TATCTGTAGC ACATGAATTA CTCAATGAAT TAGGGTGCTT GCGCGGTGTG 
GTAACGGCAA CGAAAGACGA GTTTGCTAAA GTAACAGGCA TTGGCCCGTG TAAATATGCC 
CAGTTTCAAG CTGGCTTTGA AATATTTAAG CGCAATTTAG AAATTAAGCT TCAGCGGGAA 
GACGTGTTTA ATAATGTGGA TGATACTAAG CGCTACTTAC AAGCCAAATT AAGAGACTGC 
CAGCGGGAAA AATTCGCGCT TTTAATGCTA GATAGTCAGC ATCAACTCAT CGCATTTCGC 
ACTATGTTCA ACGGAACGAT CAATAGCGCG GCGGTATATC CCAGAGAATT GATCAAACAA 
GTAATGATCG ACAATGCAGC CGCGATCATT TTAGTCCATA ATCATCCCTC AGGCGTAGCA 
GAACCAAGCC ATGCGGATAT TCGTCTAACA ACAGAGATCA AAAGTGCAAT GGCATCGATC 
GATGTGCCTG TTCTCGATCA TTTTGTGGTT GGAGACAAAG AAACTATTTC ATTCGCACAG 
CGAGGCTTGC TAACATAA
 
Protein sequence
MSIKVWPKSE RPREKLLQYG AENLSDAELI AVLLGKGVKG KNAVSVAHEL LNELGCLRGV 
VTATKDEFAK VTGIGPCKYA QFQAGFEIFK RNLEIKLQRE DVFNNVDDTK RYLQAKLRDC 
QREKFALLML DSQHQLIAFR TMFNGTINSA AVYPRELIKQ VMIDNAAAII LVHNHPSGVA 
EPSHADIRLT TEIKSAMASI DVPVLDHFVV GDKETISFAQ RGLLT