Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00031 |
Symbol | |
ID | 6779063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 32087 |
End bp | 32926 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642753456 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002124345 |
Protein GI | 196154856 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0702833 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT TCGCTGTATT TGGCAACCCT ATTGCACAGA GTTTATCACC AACCATCCAT CAGATGTTTG CAGATCAGGT CGGAGAAAAG ATTTCTTATG AAAAGATACT TGCGCCTGAA GATGGTTTTG TTGAAGCTGC CAAAGCGTTT TTAGCTCAAG AAGGCGCTGT AGGCTGCAAT GTCACCATGC CTTTTAAGCT TGATGCCTTT AACTTAGCAA AGGTAGATGA TCAAGCAGCT AAAGACGCAC AAGCTGTTAA TACACTAATG AATGGTGACA GAGGTGAGCT GTTAGGGTTC AACACAGATG GTGTGGGGCT AGTCAATGAT TTACTAAATA GCGGCGTGAA AATTAAAGAT AAACACGTGT TACTTATCGG AGCCGGCGGC GCAGCCCGTG GCGTCATTTC TCCGTTATTA AAAGCGGGCG CTGCTACACT GACTATTGCG AATAGAACGA AAGCCAAAGC TGAAGAAGTG GCAAGCGCTG CTTCAAACCC TAAAGTGGAC GTAGTGGCCC TTGAGGATAT CGCAACGATT GCACCTCATA TTATTATCAA TTCAACAGCA GCTAGTTTAA GCAATGCGTT GCCGTGCAGT TTGAATGACG GTGTTTTACA ACACTGTGAA GTGGTGTACG ACATGGTTTA TAAAAATTCA CCCACGCGTT TTATGAGAGA TGCGGCTGAA CTAGGTGTTA AAACGCAAAT AGATGGGTTA GGGATGCTGG TTGAGCAAGC GGCTGAAGCG TTCTATATAT GGACACAAAA GCGCCCAGAC ACTTCTGATA TTGTTAAGCG AGTTCGTGAC ATTGTTGAGC AAAGTGAGAA GCGAAACTAG
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Protein sequence | MKKFAVFGNP IAQSLSPTIH QMFADQVGEK ISYEKILAPE DGFVEAAKAF LAQEGAVGCN VTMPFKLDAF NLAKVDDQAA KDAQAVNTLM NGDRGELLGF NTDGVGLVND LLNSGVKIKD KHVLLIGAGG AARGVISPLL KAGAATLTIA NRTKAKAEEV ASAASNPKVD VVALEDIATI APHIIINSTA ASLSNALPCS LNDGVLQHCE VVYDMVYKNS PTRFMRDAAE LGVKTQIDGL GMLVEQAAEA FYIWTQKRPD TSDIVKRVRD IVEQSEKRN
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