Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00029 |
Symbol | |
ID | 6779073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 30867 |
End bp | 31541 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642753454 |
Product | outer membrane protein OmpW |
Protein accession | YP_002124343 |
Protein GI | 196154854 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.25785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCAAAC ACACTTTATC TGCACTTTGT CTTACCCTTG CTGCACTTTC ACCTTTAGCT AGCGCTCATC AGCAGGGCGA TTGGATTGTT CGAGGCGGTC TGACTACCGT TGCTCCTGAC GAATCTACTT CTAACATCGT CGCTGGTGGC AATGATCTTG GTGTTGCCCT TAATATTGAT AACGATACCC AGCTAGGTTT GAACGTTGCA TACTTCATTA CTGATAAAAT TAATATCGAA CTGCTTGCGG CAACGCCCTT TAAGCACGAC GTGAACTTCT CTGTTGCCGA CCCGTTAGGT ACGGGAAATC AGCTTGGTGA AGTTACTCAC TTACCGCCAA CACTCACCGC TAACTATTAC TTCAACGATG CAAGTTCAGC CTTTCAGCCA TATATTGGTG CGGGTATTAA CTACACCTTT ATCTTTGATG AGGAATTTAC TGGCGCAAAC GAGGATGCAG GCTTAAGCGA CCTATCACTC GATAACTCAT TTGGTTTATC AGCTCAAGTG GGTATGGACT ACCAAATTGA TACAAAGTGG CATGTAAATG CATCAGTACG TTTCATCGAT ATTGATACTG AAGCCACGTT TAAGGTTGGT GATGCCGCAG GTAAGGTGAG TGATATTGAA ATAGACCCTT GGGTGTACAC CATATCGGTA GGCTATACCT TTTAA
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Protein sequence | MRKHTLSALC LTLAALSPLA SAHQQGDWIV RGGLTTVAPD ESTSNIVAGG NDLGVALNID NDTQLGLNVA YFITDKINIE LLAATPFKHD VNFSVADPLG TGNQLGEVTH LPPTLTANYY FNDASSAFQP YIGAGINYTF IFDEEFTGAN EDAGLSDLSL DNSFGLSAQV GMDYQIDTKW HVNASVRFID IDTEATFKVG DAAGKVSDIE IDPWVYTISV GYTF
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