| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1530 |
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| Symbol | |
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| ID | 6744361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | - |
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| Start bp | 1443052 |
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| End bp | 1444788 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 642751351 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_002122191 |
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| Protein GI | 195953901 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAAAG CCAAAGGCAA AGAGCATCTT TTAGAAATCG GCAAAGAAAA AGGCTACGTA
ACATACGACG ACATAAACGA GTATGTCAGT GAGGACTTGG TAGAGTCCGA TGAACTAGAG
TCTTTATTCG ACATTTTGTC TGAAAAGGGT ATACAGATTT TAGAAGATGA AGCTGAAGCC
GCTATACACC ACGAAACCGA TAATGAGATT TTAGAAGAAG ACGACGAGAT GATAGTATCT
GCTAGCATAG TAGAGGCAGA TTTAAAGAAC AACGATTCCG TAAGATACTA TCTAAAAGAG
ATGGGCAAGA TAGCTCTTCT TGGAAGAGCA GATGAAATAG AACATGCAAA ATACATAGAA
ATGGGTAGAA AGCAGCTAAG AAGAGGACTA TTAAGGACAT CTTTTTTAGT GGATATGGTG
CTAAGATATT GGGCTAAAGT CTGCGATGGA AAGATGAGAT CTCAAGAGAT ACTTGATATG
CAAGAAGAAC ACACAGACTA CGACGAGTAC GAGGAAGCAG AACACGTAGA TTCTGTGTTT
ATAGAAAAGG GCATAGAGCT TGCTAAAAAA TATAAAACAG TAATAGAAAA AAGGACATTA
TTTTTAACAT ACAAAGATAA GAAAACAAAA GCAGAATACT TAAAGGCTCA CGCTGAAATG
AATAAAACGT TAAAAAGTAT AAACATCAAG TTTTCAAGAT ACGAGAAAAT AGCTGATGAG
TTTATAAAAC TATGCAAAGA CTACAAGAGC AAATTAAATT CTTTAACTAT ACAAAAAAGA
AGGTTTGAAG CCGTACATCC AAATGTGGAA GAACTTTTAT CTTACTACGA TAAAAACAAA
GAACTATTGA ATAAAATAGA AAAACACATG CCTTTTCATA CTTTTGAGAT AAGCAGGTCA
AACTACTTAG CCCTTCAAAG AGAAATAGAA GACATAGAAA GACGTTTGGG AGTGTTACCG
GAGGAGCTTA ACAAAATTAT AAACATTATA GAGCAAGGTA GAAAACGCGT AAAAGAATCA
AAAGACATGA TGGTAAAATC AAACCTAAGG CTTGTAGTAT CGATAGCTAA AAAATACATA
AACAGAGGCC TTCATTTCTT AGATCTTATA CAAGAAGGCA ATATGGGACT TATGAAGGCT
GTTGATAAAT ACGATTACAA AAAAGGTTTT AAATTTTCTA CATACGCCAC ATGGTGGATA
AAACAAGCTA TTACAAGAGC TATAGCTGAC CAAGCAAAAA CTATACGTAT ACCAGTGCAC
ATGATAGAAA CTATCAACAA AATTTCTAAA GTATCCAAAA AACTATTCCA AGAGTATGGT
AGAGAACCAT CCCCCGAAGA AATAGCAAAA GCTCTAAACA TGTCTCCAGA AAAAGTAAGG
AAAATATTGA AGTCCATTCA AGAGCCTATA TCTCTTGAAA CACCTATAGG AGATGACGAA
GATACCCATC TTAAAGATTT CATAGAAGAC TCAAGCATAT CAAACCCAGA GGAAGCCACA
GCCAGAAGAC TTCTAAGGGA GCAAATAGAA AAGATTATCA ATACACTCTC AGATAAAGAA
AGAGAAGTAA TTATGTATAG ATTTGGATTG GTAGACGGTA TAGAGCACAC GCTGGAACAA
GTAGGGACTA TGTTTAATCT TACCAGAGAG CGAATAAGAC AGATAGAATC AAAAGCTATA
AGAAAGATAA GACATCCAAG TAGAGCAAAG TATTTAAAAG ATTTTGAAAT AATATGA
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| Protein sequence | MGKAKGKEHL LEIGKEKGYV TYDDINEYVS EDLVESDELE SLFDILSEKG IQILEDEAEA
AIHHETDNEI LEEDDEMIVS ASIVEADLKN NDSVRYYLKE MGKIALLGRA DEIEHAKYIE
MGRKQLRRGL LRTSFLVDMV LRYWAKVCDG KMRSQEILDM QEEHTDYDEY EEAEHVDSVF
IEKGIELAKK YKTVIEKRTL FLTYKDKKTK AEYLKAHAEM NKTLKSINIK FSRYEKIADE
FIKLCKDYKS KLNSLTIQKR RFEAVHPNVE ELLSYYDKNK ELLNKIEKHM PFHTFEISRS
NYLALQREIE DIERRLGVLP EELNKIINII EQGRKRVKES KDMMVKSNLR LVVSIAKKYI
NRGLHFLDLI QEGNMGLMKA VDKYDYKKGF KFSTYATWWI KQAITRAIAD QAKTIRIPVH
MIETINKISK VSKKLFQEYG REPSPEEIAK ALNMSPEKVR KILKSIQEPI SLETPIGDDE
DTHLKDFIED SSISNPEEAT ARRLLREQIE KIINTLSDKE REVIMYRFGL VDGIEHTLEQ
VGTMFNLTRE RIRQIESKAI RKIRHPSRAK YLKDFEII
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