Gene HY04AAS1_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHY04AAS1_1229 
SymbolispG 
ID6744046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHydrogenobaculum sp. Y04AAS1 
KingdomBacteria 
Replicon accessionNC_011126 
Strand+ 
Start bp1139801 
End bp1140865 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content37% 
IMG OID642751038 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002121892 
Protein GI195953602 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAA GACGTAAAAC TAGAGAAATT ACGTTAGGTA CTCTAAAAAT AGGGGGAAAT 
AATCCCATCG TAGTCCAGTC CATGACATCT ACGAAAACTC ACGATATCGA AGCTACTATT 
TCTCAAATAG ATAGACTTAT AAAAGCTGGG TGTGAAGCCA TAAGAGTAGC GGTACCAGCC 
AAAGAAGATG CCGAGGCTCT CAAAGAGATA GTAAAATACT CTGAAGTGCC TATAATAGCA 
GATATTCATT TTGTGCCTTA CATGGCATTT TTATCTATGG AAGCTGGAGC CCACGGCATC 
AGAATAAACC CAGGCAATAT AAACAAAAAA GAAATAGTGA GAGATATAGT CCTAGAGGCA 
AAAAAAAGAA ATATTTGCGT AAGACTTGGG GTTAACTCTG GTTCTTTAGA AAAACATCTT 
TTGGAAAAAT ATGGATATCC AAGCGCCGAA GCTCTTGCAG AAAGCGCCCT TAACTGGTCA 
GAATTTTTTG AGTCTTTAGG CTTTTACAAC TTTAAAGTGT CTATAAAAGG TTCCGATGTA 
ATTCAAAATG CTTTAGCCAA CGAAATATTT GCAGAAAAAA CCGATACACC TCTACATATA 
GGTATAACAG AGGCAGGAAT GGGTACCCAA GGAATAGTAA AATCTTCCGT AGGGCTTGGT 
ATATTACTTT ACAAAGGTAT AGGAGATACC ATAAGAGTAT CCCTAACAGA TGAGCCAGAA 
AAAGAAGTAG AAGTAGCTTA CGAAATTTTA AAAAGTTTAG GGTTAAAGAA AAAGGGTATA 
GATATAGTCT CTTGTCCTAC GTGCGGTAGA ATAGAAGTAA ACTTACCCAA TGTTGTAAAA 
CAAGTACAAG AAGCTTTAAA AGACAAAGAC TTATCTATAA AGGTTGCAAT AATGGGTTGT 
GCGGTAAACG CCATAGGTGA GGCTTCCCAC GCAGATGTGG GGTTAGCTTG TATGAAAGGG 
GGCGCTTTGT TGTTTAAAAA TGGTAAAATC TTAAAAAAAG TTACCGAAGA AAATATGGTA 
TCAGAGCTTT TAGAAACAAT AGAAAAATAC TATCAGGAGG TATAA
 
Protein sequence
MIKRRKTREI TLGTLKIGGN NPIVVQSMTS TKTHDIEATI SQIDRLIKAG CEAIRVAVPA 
KEDAEALKEI VKYSEVPIIA DIHFVPYMAF LSMEAGAHGI RINPGNINKK EIVRDIVLEA 
KKRNICVRLG VNSGSLEKHL LEKYGYPSAE ALAESALNWS EFFESLGFYN FKVSIKGSDV 
IQNALANEIF AEKTDTPLHI GITEAGMGTQ GIVKSSVGLG ILLYKGIGDT IRVSLTDEPE 
KEVEVAYEIL KSLGLKKKGI DIVSCPTCGR IEVNLPNVVK QVQEALKDKD LSIKVAIMGC 
AVNAIGEASH ADVGLACMKG GALLFKNGKI LKKVTEENMV SELLETIEKY YQEV