| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1061 |
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| Symbol | |
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| ID | 6743876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | + |
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| Start bp | 988968 |
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| End bp | 990851 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 642750869 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002121725 |
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| Protein GI | 195953435 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00520521 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATAT TAGAACATAT AAACAGCGTA TTGGATTTAA AAGAGCTTTC AAAAGAAGAA
CTAAAGCTTT TAGCCGAAGA AATCAGAGAG TTTATCATAG ATGTAACATC CAAAAACGGA
GGTCATGTGG CTCCTGGTCT TGGTACTGTA GAACTTACCA TAGCACTTTT GAGGGTTTTT
GATGTTCCAA AAGATGTTGT GGTTTGGGAT ATAGGGCATC AAGCTTACCC TTGGAAAATA
CTAACAGATA GGAAAGAGGT ATTTCATACA CTTAGAAAAA AAGGTGGTAT ATCTGGGTTC
TTAAGAATAG AAGAGAGCTT ATACGATGCT TTTGGGGCTG GGCATAGCTC TACTTCCATA
TCGGCAGCGG AAGGTTTTAG AGTGGCAAAA GACCTATTAA AAGACGATTC TTATGTAGTA
GCCGTTATAG GGGACGGTGC CATGACCGCA GGCATGGTAT ATGAAGCTTT AAACAACATA
GGACATCTTC ATCATAACAA ACTTATAATA ATATTAAACG ACAACGAAAT GTCTATATCA
AAAAACATAG GTGCAATATC CACATATTTA AACAAACTAA TCACCGGCAG GCACATACAA
GATACAAGAA ACAAAATAAA AAATATTTTA GATAAAGCTG GGTTTGTACC AAGAAGATTT
GCAAAACTTA CAGAAGAGTT TGTAAAGGGT TTTGCCACCC CTGGTATTTT GTTTGAAGAG
CTTGGTCTAA ATTACATAGG TATAATAGAT GGTCACAACG AGGAAGCCCT TGAAACAACG
TTAAAAAACG CAAAATCTAT AGATGGACCC GTGTTAATAC ACATTGTCAC AAAGAAAGGA
AAGGGCTACG AACCAGCGGA AGAAAACCCC GTCAAATGGC ACGGTGTTGC CCCTTACAAA
AAGGAATCCG GTGAAGCTTC AAAAATGTCT GGTGGTAAAT CCTGGACCCA ATGCTTTTCC
GAAGCGCTTC TTAAAATAGC AGAGCTTGAT GAAAGAGTGG TAGCCATAAC CCCAGCCATG
AAAGAGGGTT CTGGTCTCGT GGATTTTGCT AAAAAATATC CAGATAGGTT TTTTGACGTT
GGCATAGCCG AACAGCACGC CGCTACTTTT TCTGCTGGGC TTGCTGCAGG TGGCTTAAAG
CCGGTTTTGG CTTATTATTC TACTTTTATG CAAAGAGCCT ACGACCAAAT AATACACGAT
ATAGCTCTTC AAAATCTAAA CGTTGTTTTT GCAGTGGATA GAGCTGGTTT AGTAGGAGAA
GATGGGCCTA CACACCACGG AGTTTTTGAT ATATCGTTTT TAAATTGTAT ACCAAACATC
GTTATATCAT CTCCCAAAGA CAATCTTGAG CTTTTAGACC TTCTTTACAC CGCCATAAAT
TCCAACAAAC CGTTTGCAAT AAGATATCCA AGAGGAGAAG CGGTTTTATC CAAAGAAGAA
AGAGCACCAA AGCTTATAAA AATAGGTAAA TGGGAAGTGT TAAAGCCCGG TACAGATATA
GCTATACTTA CAAACAGTTA TCTTTTAAAA GAAGCTTTAG AAGCATCTTA TGAGCTTTTA
GAGCATGGTA TAAACATAGA AGTGGTAAAT GCAAGGTTTA TAAAACCTTT AGACGAAGAT
ATGCTATTTG ATATAGCAAA AAGGTTTAAC GCTGTTCTTA GTATCGAGGA CGGGGTATTA
AAAGGAGGTT TTGGAGCCTC TATTTTAGAG TTTTTTAATG ACAATATGTT AGACGTAAAA
ATGTATAGGA TAGGTATTCC AGACAAGTTT GTAGAACATG CTTCTCAGAA AGAGCTAAGA
GAGATGTTTA ACCTTACAAA AGACGGTATT AAAAAGTTTA TATTAGAGCA TATAGTTGCA
TCTCAAAAGT TAGAAAACTT TTAA
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| Protein sequence | MSILEHINSV LDLKELSKEE LKLLAEEIRE FIIDVTSKNG GHVAPGLGTV ELTIALLRVF
DVPKDVVVWD IGHQAYPWKI LTDRKEVFHT LRKKGGISGF LRIEESLYDA FGAGHSSTSI
SAAEGFRVAK DLLKDDSYVV AVIGDGAMTA GMVYEALNNI GHLHHNKLII ILNDNEMSIS
KNIGAISTYL NKLITGRHIQ DTRNKIKNIL DKAGFVPRRF AKLTEEFVKG FATPGILFEE
LGLNYIGIID GHNEEALETT LKNAKSIDGP VLIHIVTKKG KGYEPAEENP VKWHGVAPYK
KESGEASKMS GGKSWTQCFS EALLKIAELD ERVVAITPAM KEGSGLVDFA KKYPDRFFDV
GIAEQHAATF SAGLAAGGLK PVLAYYSTFM QRAYDQIIHD IALQNLNVVF AVDRAGLVGE
DGPTHHGVFD ISFLNCIPNI VISSPKDNLE LLDLLYTAIN SNKPFAIRYP RGEAVLSKEE
RAPKLIKIGK WEVLKPGTDI AILTNSYLLK EALEASYELL EHGINIEVVN ARFIKPLDED
MLFDIAKRFN AVLSIEDGVL KGGFGASILE FFNDNMLDVK MYRIGIPDKF VEHASQKELR
EMFNLTKDGI KKFILEHIVA SQKLENF
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