| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1019 |
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| Symbol | |
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| ID | 6743832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | + |
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| Start bp | 952957 |
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| End bp | 955041 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642750825 |
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| Product | ribonuclease R |
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| Protein accession | YP_002121683 |
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| Protein GI | 195953393 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000144778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAG AAGAAATAGT TACAGCTATA GAGAGTTTGT TGTCTTCCAA GAAAAAACCA
GTCTCTTTTG GTGAACTTAC AAAACATATA CCAGTAGATA AAAAGATACT TAGGAAGACT
TTAAGAGAGT TAATCAAACA AGATAAAATC ATCACCACCA AAGGACATTT TAGCCTAAAC
AGAGAATCTA TAAAAAAGGT AGTAGGTGCT GTAGAGGCAA ATCCAGCAGG TTTTGGATTT
TTAATACGAA AGGATGGTTC TAAAGATATA TACATACCGT TTTTTGAAAT GCAGAAAGTG
TTTGACAAAG ACGAGGTGGA AGGGTATGTT GTCCTTTACA AAGGAAAAGA AGAGATAAGA
ATTGAAAGAG TCCTAAAACG AGCTAGAAAA GAGTTTGTTT GCAGCATATC AAATTTCAAA
AAATGCATTG CAAACCCAAT AGACGAAAAC CACTTTCACG ATATAGAGCT TTCTAAAAAC
CAATGCAAAA ATTTAAAACC AGAGCAGCTT GTACTTGTAA AGATAACAAA ATACCCTACA
AAGACTCAAA AAGCCAAAGG AAAAATAATT GAAGTAATAG GAAATCCATC TGAAAGTTTC
TTGTCTTTGG AGCTTTTAAA AAGAAAATAC AACTTAAAAA ATCAATACCC AAAAGAGGCT
ATAAAAGATC TAAACTCGTT TTTAGAAAAA TTTGATTTTC AAAAGGAGAT ATCAAGACGA
AAAGATTTAA GAGACCAACC TTGTTTTACC ATAGACCCAA TAAGAGCAAA AGACTTTGAC
GATGCAGTTT ATCTTGAAAA AGAAGGTGAT GACTACAGGC TTTTTGTACA TATAGCAGAT
GTGTCTTTGT TTGTAAAATT TGGAAGTGCC CTTGACAAAG AAGCCTACGA AAGAGGTACC
ACAATTTACC TTCCAGGAGA AGCTATACAT ATGCTTCCAG AAGAGCTATC TTCAAACCTT
TGTAGTCTTG TGCCAAATGA AGACAGATTT TGTCTTAGCG TGGAGATGGT TTTTGATAAA
AGCGCAAAAT TAAAACATTA CGAGATATAT GAAAGCGTTA TAAATTCAAA GGCAAGGCTC
ACCTACGACC AAGCTTTAGA TATAATAACT GGTAAAATCA AGCCACCACT TCCAAGCATA
AGAGAAACCC TTATTGAGAT GGAAAATCTC TATAGAAAAA GACATAAGAT GAGATGGGAC
TTAGGAAGTA TAGACTTTGA CCTACCAGAG GCTGAGATCG TAATAGACGA AACGGGTGAA
CCAAGTGCTA TACTACCTTA CGAAAGACAT ATAGCTCATA GGATAATAGA GGAATTTATG
GTATCTGCCA ACGAGGTAAT AGCGACATTC ATGAATGAGA AATCAGATTT AGGCTTTTAT
AGAGTTCATG AAAAACCAAA TAAAGACAAA GTCCAAAACC TTCTAGATAT ACTATCTGGA
CTTGGATACA AAACTACAAT GCCAGATGAT TTCGAGCCAA AATTTTTCCA ACGTATTATA
GAACATTTTG AGGGAAAAGA TGAGGAGTTT TTGGTGAGAT TTTTAACCTT AAGAAGTATG
CAAAAAGCCA AGTACTCACC CATAGACATA GGACACTTTG GCCTTGCATC AAAACATTAT
ACGCACTTTA CCTCTCCCAT CAGAAGGTAT CCAGATATTA TAGTACATCG GATAATAAAA
TCTATTTTAA AGAAAAAACC TTTAGCTTTT AATATGAGCT ATCTTGAAGA AGCAGCAGTG
CATTTGTCTG AAAAAGAACG TTTGGCTGAT AAAATTGAAT ACGAAGCTAT AGATTTCTTA
AGAGCAAGGT TTATGAAAGA TAAGATAGGA GAGATATTTG AAGGCATTAT CACCGGTATA
ATACAAAACG GTATCTTCGT GCAGATAAAA ACCATATTGG CCGAAGGGTT TGTAAGCATA
AGCTCTATGG AAGGTGATTT TATCTACGAC CAAGAAAATC ATAGGTTTAT AGATACCAAA
AGCCATAAAA CCTATAGGTT GGGAGATAGT GTAAAAGTAA AAGTAATAAA AGTAGATGAA
CAAAAAGGAA AGCTAGACTT TGAGATAGTA GAAGAAGTTA TATAA
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| Protein sequence | MEKEEIVTAI ESLLSSKKKP VSFGELTKHI PVDKKILRKT LRELIKQDKI ITTKGHFSLN
RESIKKVVGA VEANPAGFGF LIRKDGSKDI YIPFFEMQKV FDKDEVEGYV VLYKGKEEIR
IERVLKRARK EFVCSISNFK KCIANPIDEN HFHDIELSKN QCKNLKPEQL VLVKITKYPT
KTQKAKGKII EVIGNPSESF LSLELLKRKY NLKNQYPKEA IKDLNSFLEK FDFQKEISRR
KDLRDQPCFT IDPIRAKDFD DAVYLEKEGD DYRLFVHIAD VSLFVKFGSA LDKEAYERGT
TIYLPGEAIH MLPEELSSNL CSLVPNEDRF CLSVEMVFDK SAKLKHYEIY ESVINSKARL
TYDQALDIIT GKIKPPLPSI RETLIEMENL YRKRHKMRWD LGSIDFDLPE AEIVIDETGE
PSAILPYERH IAHRIIEEFM VSANEVIATF MNEKSDLGFY RVHEKPNKDK VQNLLDILSG
LGYKTTMPDD FEPKFFQRII EHFEGKDEEF LVRFLTLRSM QKAKYSPIDI GHFGLASKHY
THFTSPIRRY PDIIVHRIIK SILKKKPLAF NMSYLEEAAV HLSEKERLAD KIEYEAIDFL
RARFMKDKIG EIFEGIITGI IQNGIFVQIK TILAEGFVSI SSMEGDFIYD QENHRFIDTK
SHKTYRLGDS VKVKVIKVDE QKGKLDFEIV EEVI
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