| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0340 |
|---|
| Symbol | |
|---|
| ID | 6743134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | + |
|---|
| Start bp | 298658 |
|---|
| End bp | 300331 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 642750133 |
|---|
| Product | cytochrome d1 heme region |
|---|
| Protein accession | YP_002121008 |
|---|
| Protein GI | 195952718 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000596399 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATTA GGTTAATTTT TCTTAGCTTG CTTCTTTGCT GTCCATTGCT ATCCTCCTTC
TCCTCTCCAG CAAGTCTGGG GGGAGATTTA TACAAAGACA AGTGCGCTAA GTGTCACGGT
ATTAATAGAA TGGGATTATC CGGGCCACCA TTAATTCCTG AATTCCTAAA ATCAAAATCT
GACAACACAC TTTTTAAGAT TATAAAAAAC GGTATACCTC CTACGCTTAT GCCGTCCTTT
AAAGATTTAA CAGACAAACA AATAGAAAGT CTCATTGCTT TTGTTAAGAC GCCCGTTACT
GTGAACACCT GGAGTTTATC TGATATAAGG AAGACATGGT ATAAGTTAAG TGCTCAAAAC
CCAAAGCCAT GGCATAGAAC AATAGTAAAT TTTATGGCTT TGGTGGAAGC TGGTAAGAAC
AGGGTGTGGT TTCTAAATAA AGCCCATGTA ATAAACAAAA TAAATTTTGG AGACATCCAT
GGGGGGCTAA AGTTTTCTAA CGATGGGAAG TTTATCTACA TTCCTTCAAG GACAGGATAT
ATAGGTAGAT ACAACATAAG AAAAGGATAC TTGGATTATA AAGTAAGGGC ATGCTTATAC
CAAAGAAATG TAAGCTTATT TTCCAACGGG GTAATATCAG CATGTTGGTT ACCTTCTCAA
ATAGTAATCC TTAACAAAAA ATTAGAACCA AAAGCCGTAA TTCCAATAGA TGGCAAAATT
AGTGCTATCT ATGGGTTATA CAATTCTCCT TACGCCGTGT TTGGTTTAAT GCATAAAAGT
GTATTGGGTT TTCTCAACAC AAGCTCTTTA AACCTAAAAT ACTACGATGT TCCTACTGCT
TTTGAAGACT TTTTCATAGA TCCGTTGGAG CATTTCGTAG TGGGAACTTC ATTTAATCAC
AACGTACTAT CAGTATTTGA TATAAAATCC AAAAAAATTG TATATCAAAC CTCCTTTGGA
GGGATGCCTC ATCTTGCTTC TGCAGCCTTT TGGTATAAAG ATAAAAATTT TTACTTTGCC
ACCCCAGATT TAAAGAAACC AGTAATCACC ATATGGAGAG CCTACAAATG GAAAAAGATA
AAAGAGATTC CTTCAAAAGG TGTTGGATTT TTTGTTAAAA CCAATCCAAA CACACCTTAT
CTATGGGCTG ATGAACATGC AAACACGTTA CTTCTAATAA AGAAGACCGA TTTTAAACCC
ATCCATGTAA AACTAGTTAA GAAAGGTTGG ATAATCCACA CCCAGTTTTC GGGAGATGGT
AAATATGCCT ATGTAAGCGA TTATGCAAAA AATGGTAACG TTTTTATACT TGATTCAACG
ACTCTTAAAC TTATAAAATC TTTTCCAGCA TCCTATCCCA TTGGAAAATA CAACTACGTT
ACGTACTCAA ACAGAAGAGA AGCAGCCCTT TTAGGTGAAG AGGTGTATTT ACAATATTGC
TGGGGATGTC ATCACCCCAC TAGAACCGCC TTTGCCCCTT CTTTTAAATA TATAGCAAAG
CATATACCCA TATCTTTAAT AAAAGCTCAG ATACTAAGCC CAGATCAAAC ATATAAGCTG
TTGGGATTTA AGCAAAATGT TATGCCAAAG TTCCACCTGT CAAAATACGA GATAGACGCC
TTGCTGATGT TTATTGAATA TTCTAAAAAT AGAAACTTTT GGGATAGCCA CTGA
|
|---|
| Protein sequence | MRIRLIFLSL LLCCPLLSSF SSPASLGGDL YKDKCAKCHG INRMGLSGPP LIPEFLKSKS
DNTLFKIIKN GIPPTLMPSF KDLTDKQIES LIAFVKTPVT VNTWSLSDIR KTWYKLSAQN
PKPWHRTIVN FMALVEAGKN RVWFLNKAHV INKINFGDIH GGLKFSNDGK FIYIPSRTGY
IGRYNIRKGY LDYKVRACLY QRNVSLFSNG VISACWLPSQ IVILNKKLEP KAVIPIDGKI
SAIYGLYNSP YAVFGLMHKS VLGFLNTSSL NLKYYDVPTA FEDFFIDPLE HFVVGTSFNH
NVLSVFDIKS KKIVYQTSFG GMPHLASAAF WYKDKNFYFA TPDLKKPVIT IWRAYKWKKI
KEIPSKGVGF FVKTNPNTPY LWADEHANTL LLIKKTDFKP IHVKLVKKGW IIHTQFSGDG
KYAYVSDYAK NGNVFILDST TLKLIKSFPA SYPIGKYNYV TYSNRREAAL LGEEVYLQYC
WGCHHPTRTA FAPSFKYIAK HIPISLIKAQ ILSPDQTYKL LGFKQNVMPK FHLSKYEIDA
LLMFIEYSKN RNFWDSH
|
|---|
| |