Gene HY04AAS1_0292 details

Gene Information

• Locus tag: HY04AAS1_0292
• Symbol: rpsD
• ID: 6743086
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Hydrogenobaculum sp. Y04AAS1
• Kingdom: Bacteria
• Replicon accession: NC_011126
• Strand: +
• Start bp: 253771
• End bp: 254394
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 642750085
• Product: 30S ribosomal protein S4
• Protein accession: YP_002120960
• Protein GI: 195952670
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000188387
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAAGAA AGATACAAGC TTGGTCTAAG GTAGACAGAA GATTCGGCGT CGTTGTTTCA 
GGGAAGTTAA GCGGCAACAA GATTTTAACC AGAAGAAATT TCCCACCAGG TCAACACGGT 
AGAACCAAAG GTCGTAGGGC TAAATCTACA GAGTTTGGGC TTAGGTTAAA TGAAAAACAA 
AAACTTAAAA TGTTGTACGG CGGTTTAAGA GAGTCTCAAT TTAGAAAGTA CTTTGATAAA 
GCTTCAAAGG CAAAAGGTAA TACAGCTTCT GTAATGATAG AGCTTTTAGA AAGACGCTTA 
GATAACGTAG TTTATAGATT GGGTATAGCT TGTACCAGAA GGCAAGCTCG TCAGTTTGTA 
GTACATGGCC ATATAATGGT AAACGGAAAG AAAGTTGACA TACCATCCTA TCAGGTAAAC 
GTTGGAGATA TAATAGAGGT GTACTCTAAA GATATACCTC AGATAAGGCA AAACCTTGAA 
AACCTTGATC CAAGAAGCGT ACCTCACTGG CTTGAAATAG ATAAAGATAA TTTTAGAGGT 
AAGGTTGTGG ATAAACCTAA GGATGTTGTT TTGGAAGTGC CTATAAACAT GCAGTACATC 
ATTGAGTATT ATTCAAGGGT GTAA 

 

Protein sequence

MGRKIQAWSK VDRRFGVVVS GKLSGNKILT RRNFPPGQHG RTKGRRAKST EFGLRLNEKQ 
KLKMLYGGLR ESQFRKYFDK ASKAKGNTAS VMIELLERRL DNVVYRLGIA CTRRQARQFV 
VHGHIMVNGK KVDIPSYQVN VGDIIEVYSK DIPQIRQNLE NLDPRSVPHW LEIDKDNFRG 
KVVDKPKDVV LEVPINMQYI IEYYSRV