| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0017 |
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| Symbol | |
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| ID | 6742798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | - |
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| Start bp | 17522 |
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| End bp | 18241 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 642749800 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002120687 |
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| Protein GI | 195952397 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0000355614 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTTAA ATAGATTTTT ATCTTTGGCT GGGGTATGCT CTAGAAGAAA AGCAGATGAA
TATATAGAAA AAGGCTACGT TAAGGTAAAC AACAATATAG TAAAAGAGCT TGGTACTACT
ATAAATCCAG ATGAGGATAT AGTAGAGTTT AGAGGGCGCA TAGTAAAAGC TCAAAAACCA
GTATATATAA TACTAAATAA ACCATGCTGC TATCTCACGT CTTTGGGAGA AAAAGAAGAA
AAGCCCACCA TAAGAGAACT AATAAAAGAT GTGGGCGTTA GAGTATATCC AGCTGGAAGG
TTAGATTACA ACGTAGAAGG GCTTTTGATA CTTACAAACG ACGGAGAGTT GGCAAACAGA
ATAATACATC CAAGATACAA GCTACCAAAA GTATATATAG CCACTATAAA AGGCGAGATA
GATGATGAAA CGTTGGAAAA GATGAAAAGG GGCGTAAGGC TAGAGGATGG GTTTGTAAAA
CCAGATAGTT TGAAGCTTTT AAAAAGATTT AAAAATGGTG CAAACATAGA AATAACTTTC
CATGAAGGTA AAAACCATCT TGTAAAAAGG TTTTTCTTAG CTTTTAAAAA GCCTGTAAAA
CATCTTATAA GAACAGCGAT AGGCCCTATT TCTCTTGGTA ATTTGCCAAA AGGTAAATGG
AGACATTTAA AACCAGCAGA AATAAAACTT CTATTTGAAG CCCTACACTA TAAAGCGTAA
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| Protein sequence | MRLNRFLSLA GVCSRRKADE YIEKGYVKVN NNIVKELGTT INPDEDIVEF RGRIVKAQKP
VYIILNKPCC YLTSLGEKEE KPTIRELIKD VGVRVYPAGR LDYNVEGLLI LTNDGELANR
IIHPRYKLPK VYIATIKGEI DDETLEKMKR GVRLEDGFVK PDSLKLLKRF KNGANIEITF
HEGKNHLVKR FFLAFKKPVK HLIRTAIGPI SLGNLPKGKW RHLKPAEIKL LFEALHYKA
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