Gene SeSA_A4788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A4788 
Symbol 
ID6517889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp4648450 
End bp4651215 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content54% 
IMG OID642749720 
Productsigma-54 dependent DNA-binding response regulator 
Protein accessionYP_002117452 
Protein GI194737223 
COG category[K] Transcription 
COG ID[COG3933] Transcriptional antiterminator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.566133 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.531695 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAAG ATGCCCTGCT TGCTTTCCTG ATGAACCAAA CGGATTTTTT TGATCCGGAA 
AATGTCAGTG AGGTGTTTAC CGCGCGCTAT CTGGCGCAGC GTTTTAATAT GCAGCGCAAT
ACCGCCAGCC ATTATCTGAA CCAACTGGTG GCGCAGGGCG TGCTCTGCAA AATCAATACC
CGTCCCGTCT ATTTCCTGCA TAAGCAGGCA TTTAGCCAAC AGTTTTTTAC CCTTTCGCGT
AATGAATACG CCAGCGTCGC GGAGCTGTTA GCGCACGGGG AACAGGAGTG CGCGCCGGAC
GATCACTTTT CCCTGTTGAT TGGCCATAAC GAAAGCCTGA AGCGCCCGAT TGAGCAACTG
AAAACCGCGC TTTTTTATCC CGACGGCGGA CTGCCGCTAC TGATGACCGG CGAAAGCGGC
ACCGGGAAAA GTTATCTGGC GCAGCTCATG CACGAATATG CCATCGCCCA GGCGCTTCTG
TCGCCGGATG CGCCATTTAT CAGTTTTAAT TGCGCCCAGT ATGCGAGCAA TCCCGAACTG
CTGGCGGCGA ATCTTTTTGG CTATGTGAAG GGCGCGTTTA CCGGCGCGCA GAGCGACAGA
CCGGGCGCGT TCGAGGCGGC TGACGGCGGC ATGTTATTTC TGGATGAAGT CCACCGGCTG
AGCGCCGAAG GGCAGGAGAA GCTCTTTACC TGGCTCGATC GTGGTGAAAT TTATCGGGTA
GGCGACACCG CGCAGGGGCA TCCGGTTTCG GTACGTTTGG TATTTGCGAC GACCGAAGAG
ATACACAGTA CCTTTCTGAC GACATTTTTG CGGCGCATCC CGATTCAGGT CAACCTGCCG
GATCTCCAGC ACCGCAGCCG CCAGGAAAAA GAGGCGCTGA TCTTACTGTT TTTCTGGACG
GAGGCGAAAA AACTCTCGGC CACGCTTATC CTCAAACCGC GTTTGTTGCA GATCCTCAAT
CAGTATGTTT ATCGCGGCAA CGTCGGCGAA CTGAAAAATG TGGTGAAGTA TGCGGTGGCG
ACGGCATGGG CGAAAAAGCC TGGGCAGGAA ACCGTTACCG TGTCGCTGCA CGATCTGCCG
GATGCCATGC TGTCGGCATT GCCGTCACTA AATGAATCGC TGGCGGACGA CACGCCGGTG
AGCATCACGC CCGACACGAA CCTGACTTGG CTGCTGCGCG CCCGCGACGA GATGCAGGGC
ATGATCCATG ATACGCAGTG TCATGTGCTG GCGCTGTACG AGCTGGTACG TAGCGGGAAA
GAGGGGTGGG AGACGGTACA AAAAAGAATG GGCGATGAAA TTGAAGCTCT CTTCGATCGT
CTGATTTTTA CCGGCGACGA TAATGTGCAC TCCCAGCGGT TGCTGTTAAT TACAAGCCAG
GTGCGGGAAG AGTTTTATCG TCTGGAGAAG CGTTTCAATA TGCAGCTTAA CGGCAACTGT
ATTTACGCGC TTAGCCACTA TTTAATCCAT CGTACCGCAC TGGCGCCTTC TCGTCTCAAC
AGCGAGCAGA TCCGCCAACT GGACGCCTTC CTCGCCCAGA AATATCCGCT GCTGTACAGC
TTCTGTTTAC AAATTCTGGA GACGCTGGGC CAGAAGCTGG ATCTGGAGCC GAGACGCATT
GATATGCTGC TGCTGGCGCT TTGGCTGCAT AAACAGGGGG CTAACAACCA AAAACAGGTG
ACGCATGCGG TGATTCTGGC GCACGGCTAT GCCACCGCCA GCAGTATCGC CAACGTCGCC
AACCGGTTAC TGAAAAATAC GATTTTTGAA TCGTTCGATA TGCCGTTGGA CGTCACGCCG
GAGGCGATAG CGCAGCAGGT GATGCGCTAT CTGGAAGGGC ACCCGCTCGC CTCTGGCCTG
ATGATTCTGG TGGATATGGG ATCGCTCAAG GCCATTCATC GTCATTTTGA TCGCGCGCTT
TCCACGCCGG TGACGATTAT CAACAACGTA TCGACCAGCA TGGCCCTGTA TGTCGGGGAG
CGTATTTTAC AGGGGCATTT TATTGAAGAG ATCGCCCGCG ATATCGCCCG GGATGTGCCG
GTCGAGTATC AGCTCTACTG GCCGAAAAGC AACAAACCGC GCGCCATACT GACCACCTGC
GCGACCGGTA TCGGTGTGGC GACTAATCTT TGCGCATTAC TGAGCGCCAG TATTCCGCAG
GCGCTGGAGA TTGACGTCGT CGCCTGCGAT TATGCGATGC TGGCGAGCAA TAAAACCCAG
GAGCCGGTAT TTATGCGCTA CGACGTACTG GCGATAGTCG GTACGTTGGA CCCGCACATC
GCCAGCGTGC CGTGGATTTC GCTCGACTCG CTGATCTCCG GCGAGGGGAA TCACTATCTG
ATGCGGCTGT TTGGTTCGCT GACCACGCCG GAGCAGGTGG CGGAGATCAA CAACCTGCTG
CTGAAAAACT TCTCGCTCCG ACGAGTGATC GAATCCGTCA CCATCCTCGA CACCAGCAAA
GTCATCAACC ACGTTGAGCA GTTTCTGCTG CGCTATGAGC ATCTGGCGGG CGTTACCGTC
TCGAATGAAA GAAAGGTGGC GCTCTATGTG CATATTAGTT GCCTGATTGA GCGTCTGATC
CGCCATGCGG GCATTACTGC TTATAGTGGA CAACAGTGTC CGGAACAGGA ACTGAATCGG
CTACGGGAAG CGTTTAGTGT CATTGAGAAT AACTACAGTG TCAAAATCCC CACCGCCGAG
CTTGGCTATA TCCATAATAT TCTGACCTTC GAAACAGAAC TTATCGAGCA AGATCAACAG
TTTTAA
 
Protein sequence
MRKDALLAFL MNQTDFFDPE NVSEVFTARY LAQRFNMQRN TASHYLNQLV AQGVLCKINT 
RPVYFLHKQA FSQQFFTLSR NEYASVAELL AHGEQECAPD DHFSLLIGHN ESLKRPIEQL
KTALFYPDGG LPLLMTGESG TGKSYLAQLM HEYAIAQALL SPDAPFISFN CAQYASNPEL
LAANLFGYVK GAFTGAQSDR PGAFEAADGG MLFLDEVHRL SAEGQEKLFT WLDRGEIYRV
GDTAQGHPVS VRLVFATTEE IHSTFLTTFL RRIPIQVNLP DLQHRSRQEK EALILLFFWT
EAKKLSATLI LKPRLLQILN QYVYRGNVGE LKNVVKYAVA TAWAKKPGQE TVTVSLHDLP
DAMLSALPSL NESLADDTPV SITPDTNLTW LLRARDEMQG MIHDTQCHVL ALYELVRSGK
EGWETVQKRM GDEIEALFDR LIFTGDDNVH SQRLLLITSQ VREEFYRLEK RFNMQLNGNC
IYALSHYLIH RTALAPSRLN SEQIRQLDAF LAQKYPLLYS FCLQILETLG QKLDLEPRRI
DMLLLALWLH KQGANNQKQV THAVILAHGY ATASSIANVA NRLLKNTIFE SFDMPLDVTP
EAIAQQVMRY LEGHPLASGL MILVDMGSLK AIHRHFDRAL STPVTIINNV STSMALYVGE
RILQGHFIEE IARDIARDVP VEYQLYWPKS NKPRAILTTC ATGIGVATNL CALLSASIPQ
ALEIDVVACD YAMLASNKTQ EPVFMRYDVL AIVGTLDPHI ASVPWISLDS LISGEGNHYL
MRLFGSLTTP EQVAEINNLL LKNFSLRRVI ESVTILDTSK VINHVEQFLL RYEHLAGVTV
SNERKVALYV HISCLIERLI RHAGITAYSG QQCPEQELNR LREAFSVIEN NYSVKIPTAE
LGYIHNILTF ETELIEQDQQ F