| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A4579 |
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| Symbol | |
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| ID | 6519355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | + |
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| Start bp | 4455678 |
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| End bp | 4458116 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642749520 |
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| Product | CshB porin |
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| Protein accession | YP_002117256 |
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| Protein GI | 194733941 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.363192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGGA ATAACGTAAG ACAGCCAGCC TGCCAGATGT CTTTTCGCCA TGCCGTGCTG
GCATTTGCGA TAGCGGTTGC CCTGGGCAGC GGTACCGCAA GTGCCGGAGA GAAACTGGAC
ATGTCCTTTA TTCAGGGCGG GGCGGGGATT AACCCTGAGG TCTGGGCGGC GCTGAACGGA
GATTATGCGC CGGGGCGCTA CCTGGTGGAC CTGTCCCTGA ACGGGAAGGA TATCGGGAAG
CGGATCCTGG ACGTAACACC ACAGGACAGC GAAGCGCTGT GTCTGTCAGA AGCGTGGCTG
GCAAAGGCCG GAATTTATGT CAGCGCGGAG TACTTCCGTA AGGGATATGA CGCCACGCGG
CAGTGCTGGG TGCTGGCGAA AGCGCCGGCG GTGAAGGTGG ACTTTGATGT CGCCACCCAG
AGCCTGTCGC TGGCCATTCC GCAGAAAGGA CTGGTGAAAA TGCCGGAGAA CGTGGAGTGG
GACTACGGCA CGGAGGCGTT CCGGATGAAC TACAACGCGA ACGCCAACAG CGGGCGGTAC
AACACGTCGG CGTTCGGCTC AGCAGACCTG AAGGCCAACA TCGGTCGCTG GGTGGTGAGC
TCGTCAGCCA CAGCCAGCAC CGGGGATGGC GGGAGCAACG AGGCCACGAT AAACATGTTC
ACGGCCACCC GGGCCATCCG CTCCCTGAGT GCGGACCTGG CGGTCGGGAA GACCTCGACC
GGTGACAGCC TGCTGGGCAG TACCGGCACG TACGGGGTGT CCCTGTCGCG GAACAACAGC
ATGAAGCCGG GCAACCTGGG GTATACCCCG GTGTTCAGCG GCATTGCGAA CGGTCCCTCA
AGGGTGACCC TGACCCAGAA CGGCAGGATG CTGTACTCGG GGATGATGCC GTCCGGGCCG
TTCTCCGTCA CGGATGTGCC GCTGTACAGC AGCGGGGACG TGACGATGAC CGTCACCGGG
GATGACGGGC GGGTGCAGAC GCAGGTCTTC CCGCTGTCGG TAATGGCCGG GCAGCTGAGT
CCGGGACAGC ACGAGTTCAG CGTGGCGGCC GGGATACCGG ACGACGACAG CGACCTGGAG
GGCGGGGTGT TTGCCGCGTC ATACGGGTAT GGTCTGGACG GGCTGACTCT GCGCACGGGA
GGCGTGTTCA ACCAGGACTG GCAGGGCGCC AGTGCCGGTG CGGTACTGGG ACTCGGTTAT
CTGGGGGCGG TGTCTGCTGA CGGCGCTTAT GCCACGGCGA AGTACCGGGA CGGCAGTCGC
AGCGGGAACA AGGTGAAACT GGCCTGGAGC AAACAGCTGG CGCTGACGAA CACCGGCCTG
CGGGTGAGCT GGTCACATCA GAGTGAGGAA TATGAGGACA TGTCCTCCTT TGACCCGGCT
GAAACATGGC TGCAGCAGAA CCAGGGGCGC CGGACCCGGG ATGAGTGGAA TGCGGGCATC
AGCCAGCCGG TGGGAGGGCT GTTCAGCCTG TCGGCGTCGG GATGGCAGCG GAGCTATTAC
CCGGCCTCCA CGACCGGCAG TTACCGGTAC GCTGATGACA ACGGTAAGGA GACAGGAATT
ACCGGTACCC TGAGCACACA GATAAAAAGC GTCAGCCTGA ATCTGGGCTG GTCCGGGTCC
CGGAACATGA ACGGGGAGAA CACCTGGTCG GCCTCCGCGT CGGTGTCGGT GCCGTTCACC
CTGTTTGAGC GGAAGTACAG CAGCAGTACC ACGGTGAGCA CCGGTAAAGA TGGCGGCACC
GGCGTCAGTA CCGGTATCTC CGGGGCCCTG AACGACCGGT TCAGCTACGG TCTGGGCGGC
GGCCGTGACA GTGACGGCGG TATCAGCAGT TACCTGAACG CCGCCTACAG CGGCGACCGG
GCGAACCTGA ACGGCACGGT GAACCACTCG TCCGGTTCGG GCACCAGTGG TTCGGTGTCA
GCCAGCGGTT CGGTACTGGC GGTGCCGGCG GCGCGGGACA TCATGTTCAG CCGGACCACC
GGCGACACGG TGGCGGTGGT GAGCGTGAAG GACACGCCGG GGGTGAAGGT GATGTCCGGC
AATGAAACGT CGGACAGTGA CGGAAACCTG GTAGTACCGC TGAACAGCTA TGACTGGAAT
ACGGTGACCA TAGATGCGGG CACGCTGCCG CTGGACACGG AGCTGTCCAC GACCAGCCGG
AAGGTGGTGC CGACGGACAG GGCGGTGGTG TGGATGCCGT TTGATGCTCT GAAGGTGCAC
CGTTACCTGC TGCAGGTGAG GATGCCGGAC GGGGCCTTTG TGCCGGGCGG CACATGGGCA
CGGGACAGCA ATAACACGCC GCTGGGCTTT GTGGCGAACA ACGGCGTGCT GATGATTAAC
GCGGTGGACC GCCCCGGCGA TATCACGCTG GGACAGTGCC GGATACCTGC GGCGAAACTG
CAGGAGACGG CGAAACTACA GGAAATTACG TGCGAATAA
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| Protein sequence | MNGNNVRQPA CQMSFRHAVL AFAIAVALGS GTASAGEKLD MSFIQGGAGI NPEVWAALNG
DYAPGRYLVD LSLNGKDIGK RILDVTPQDS EALCLSEAWL AKAGIYVSAE YFRKGYDATR
QCWVLAKAPA VKVDFDVATQ SLSLAIPQKG LVKMPENVEW DYGTEAFRMN YNANANSGRY
NTSAFGSADL KANIGRWVVS SSATASTGDG GSNEATINMF TATRAIRSLS ADLAVGKTST
GDSLLGSTGT YGVSLSRNNS MKPGNLGYTP VFSGIANGPS RVTLTQNGRM LYSGMMPSGP
FSVTDVPLYS SGDVTMTVTG DDGRVQTQVF PLSVMAGQLS PGQHEFSVAA GIPDDDSDLE
GGVFAASYGY GLDGLTLRTG GVFNQDWQGA SAGAVLGLGY LGAVSADGAY ATAKYRDGSR
SGNKVKLAWS KQLALTNTGL RVSWSHQSEE YEDMSSFDPA ETWLQQNQGR RTRDEWNAGI
SQPVGGLFSL SASGWQRSYY PASTTGSYRY ADDNGKETGI TGTLSTQIKS VSLNLGWSGS
RNMNGENTWS ASASVSVPFT LFERKYSSST TVSTGKDGGT GVSTGISGAL NDRFSYGLGG
GRDSDGGISS YLNAAYSGDR ANLNGTVNHS SGSGTSGSVS ASGSVLAVPA ARDIMFSRTT
GDTVAVVSVK DTPGVKVMSG NETSDSDGNL VVPLNSYDWN TVTIDAGTLP LDTELSTTSR
KVVPTDRAVV WMPFDALKVH RYLLQVRMPD GAFVPGGTWA RDSNNTPLGF VANNGVLMIN
AVDRPGDITL GQCRIPAAKL QETAKLQEIT CE
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