Gene SeSA_A4268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A4268 
Symbol 
ID6516480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp4139613 
End bp4140284 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content42% 
IMG OID642749228 
Productoligogalacturonate-specific porin 
Protein accessionYP_002116975 
Protein GI194734730 
COG category 
COG ID 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.822939 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAT CTCTTTTCTT ACTATTACCT CTTGTTGTAA CAAATGCGCA TGCAGTATAT 
GTCGATGTTC GTCATGAATA TCTTGACGAC AGTAAAGCTA ACTATGACCG TGCGTATATT 
TCTCATCGGT TTGCGAATGG TTTTGGTTTT GCGATAGAAG CTATCTCAAA ATCAGGCGGG 
GATGACACCA ATAAAGCGTT TAATGACCTG GAAACACAGG GCAACGAATA TACGATAAGC 
TACCAATTTA AAACCGGTGA TGTCGCCTGG CAACCGGGTT TTGTGCTGGA AACCGGCAAT 
GGTTACTCTA CCTATAAGCC TTACTTCCGC GCGACGTGGA CATTAAATGA AAGCTGGTGG 
GTTGGTGCGC GCTATCGTTT TGAATATGTA CGCCGTTCTT CTGATATCCG TGATGATGAT 
ACCATCAATC GTATGGATGT CTGGGCGGGT TATAAATGGA ACAACTTTGA CTGGACAATC 
GAAGGAATTT ATAAGAAAGC TGATAAATAT GATCTTTACG ATGGCGGCAA AGATAACTAT 
GAATATAACT TCAGAACTGC CTATATTATT GATCAATGGT CGCCATTCGT TGAGGTAGGT 
AATGTTTCCG TCAATAGCAA CAGCGATGAA AGACAAACCC GTTTCCGCGT GGGTATAGGC 
TACACATTCT AA
 
Protein sequence
MRKSLFLLLP LVVTNAHAVY VDVRHEYLDD SKANYDRAYI SHRFANGFGF AIEAISKSGG 
DDTNKAFNDL ETQGNEYTIS YQFKTGDVAW QPGFVLETGN GYSTYKPYFR ATWTLNESWW 
VGARYRFEYV RRSSDIRDDD TINRMDVWAG YKWNNFDWTI EGIYKKADKY DLYDGGKDNY 
EYNFRTAYII DQWSPFVEVG NVSVNSNSDE RQTRFRVGIG YTF