Gene SeSA_A4260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A4260 
SymbolrhaA 
ID6517271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp4133101 
End bp4134360 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content59% 
IMG OID642749220 
ProductL-rhamnose isomerase 
Protein accessionYP_002116967 
Protein GI194735576 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4806] L-rhamnose isomerase 
TIGRFAM ID[TIGR01748] L-rhamnose isomerase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.435569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACTC AACTGGAACA AGCCTGGGAA CTGGCAAAAC AACGTTTCGC CGCAGTAGGT 
ATTGATGTCG AGGAGGCGCT GCGCCAGCTC GATCGCCTGC CGGTTTCCAT GCACTGCTGG 
CAGGGCGACG ATGTTGCCGG ATTCGAGAAC CCGGAAGGTT CGCTGACGGG CGGAATTCAG 
TCAACCGGCA ACTATCCGGG CAAAGCGCGT AACGCCACCG AACTGCGCGC CGATCTGGAA 
CAGGCGCTGC GCCTGATCCC AGGCCCAAAA CGGCTGAACC TGCACGCTAT CTACCTTGAG 
TCGGATACGC CGGTTGCCCG CGACCAGATC AAACCGGAGC ATTTTAAAAA CTGGGTGGAG 
TGGGCGAAAG CGAACCGGCT GGGGCTGGAT TTCAACCCCA CCTGTTTTTC TCATCCACTG 
AGCGCTGACG GTTTTACCCT CTCTCATCCA GACGCGAAAA TTCGCCAGTT CTGGATCGAT 
CACTGCAAGG CCAGCCGCCG CGTCTCGGCA TACTTTGGTG AGCAGCTCGG TACGCCGTCG 
GTGATGAACA TCTGGATCCC GGACGGCATG AAAGACATTA CCGTCGACCG TTTAGCCCCG 
CGCCAGCGCC TGCTGGAAGC GCTGGATGAG GTCATTAGCG AGAAATTCGA CCCGGCGCAC 
CACATCGACG CCGTCGAAAG CAAACTGTTT GGCATCGGCG CGGAAAGCTA CACCGTCGGC 
TCCAATGAGT TCTACATGGG CTACGCCACC AGCCGTCAGA CCGCGCTGTG CCTGGATGCG 
GGCCACTTCC ATCCCACTGA AGTGATTTCC GACAAAATTT CCGCCGCCAT GCTCTACGTG 
CCACGGCTGC TGCTGCACGT CAGCCGCCCG GTACGCTGGG ATAGCGACCA CGTGGTGCTC 
CTGGACGATG AAACCCAGGC AATTGCCAGC GAGATCGTCC GTCATAACCT GTTCGACCGT 
GTGCATATCG GCCTGGATTT CTTCGACGCC TCTATCAACC GTGTCGCCGC GTGGGTTATC 
GGTACCCGCA ACATGAAAAA AGCGCTGCTG CGCGCTCTGC TGGAACCCAC AGATCAACTG 
CGTCAGCTTG AAGCCAGCGG CGATTACACC GCGCGTCTGG CGCTGCTGGA AGAGCAGAAA 
TCTCTGCCGT GGCAGGCCGT CTGGGAAATG TATTGCCAGC GTCACGACAC GCCGACTGGC 
AGCCAGTGGC TGGACAGCGT TCGCACCTAC GAAAAAGAGA TCCTGAGCAA ACGTAGCTGA
 
Protein sequence
MTTQLEQAWE LAKQRFAAVG IDVEEALRQL DRLPVSMHCW QGDDVAGFEN PEGSLTGGIQ 
STGNYPGKAR NATELRADLE QALRLIPGPK RLNLHAIYLE SDTPVARDQI KPEHFKNWVE 
WAKANRLGLD FNPTCFSHPL SADGFTLSHP DAKIRQFWID HCKASRRVSA YFGEQLGTPS 
VMNIWIPDGM KDITVDRLAP RQRLLEALDE VISEKFDPAH HIDAVESKLF GIGAESYTVG 
SNEFYMGYAT SRQTALCLDA GHFHPTEVIS DKISAAMLYV PRLLLHVSRP VRWDSDHVVL 
LDDETQAIAS EIVRHNLFDR VHIGLDFFDA SINRVAAWVI GTRNMKKALL RALLEPTDQL 
RQLEASGDYT ARLALLEEQK SLPWQAVWEM YCQRHDTPTG SQWLDSVRTY EKEILSKRS