Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A4055 |
Symbol | trmE |
ID | 6515851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 3928541 |
End bp | 3929905 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642749024 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_002116786 |
Protein GI | 194736496 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.765231 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCATA ACGACACTAT CGTCGCCCAG GCAACCCCAC CGGGACGCGG TGGCGTGGGT ATCCTGCGTA TCTCTGGTCT GAAGGCGCGC GACGTTGCGC AAGAGGTGCT GGGCAAGCTG CCGAAGCCGC GCTATGCCGA CTACCTGCCG TTTAAAGACG TTGACGGCAG CGCGCTGGAT CAGGGTATTG CGCTGTGGTT CCCCGGCCCG AACTCCTTCA CCGGTGAAGA TGTGCTGGAG CTACAAGGGC ACGGCGGTCC GGTGATCCTG GACCTGCTGT TAAAACGTAT CCTGACGCTT CCAGGCGTGC GCATTGCCCG ACCGGGCGAG TTCTCCGAGC GAGCGTTCCT CAACGATAAG CTCGATTTAG CCCAGGCGGA AGCCATTGCC GACCTGATCG ATGCCAGTTC CGAACAGGCG GCGCGTTCGG CGCTAAACTC GTTACAGGGG GCATTTTCCG CCCGCGTTAA CCACCTTGTG GAAGCACTTA CTCACCTGCG AATCTACGTC GAAGCGGCTA TTGATTTTCC GGATGAGGAG ATCGACTTTC TCTCTGACGG CAAAATCGAA GCGCAGCTCA ATGGCGTCAT CGCCGATCTT GACGCCGTGC GCACCGAAGC GCGCCAGGGT AGCCTGCTGC GCGAAGGGAT GAAGGTAGTG ATTGCCGGAC GCCCGAATGC CGGGAAATCC AGCCTGCTGA ATGCGCTGGC AGGCCGTGAA GCTGCCATTG TCACCGATAT CGCCGGTACC ACGCGCGACG TGTTGCGCGA GCATATTCAC ATCGACGGGA TGCCGCTGCA TATCATCGAT ACCGCCGGAC TGCGCGACGC CAGCGACGAA GTTGAGCGTA TCGGCATCGA ACGCGCCTGG CAGGAGATTG AACAGGCCGA TCGCGTGCTG TTTATGGTGG ATGGCACCAC GACGGACGCC GTTGACCCTG CCGACATCTG GCCGGACTTT ATCGCCCGTC TGCCCAAAAA TCTACCGATT ACCGTGGTAC GTAACAAGGC GGATATCACC GGCGAAACGC TGGGTATTAG TGAAGTAAAT GGTCACTCAC TGGTTCGCCT CTCGGCGCGT ACCGGCGAAG GCGTCGACGT GCTGCGTAAC CACCTCAAGC AGAGCATGGG TTTTGATACC AATATGGAAG GCGGCTTCCT GGCCCGCCGC CGTCACCTGC AGGCGCTGGC GGAAGCCGCT GAACATCTTG AGCAGGGCAA AGCACAGCTA TTAGGCGCGT GGGCGGGGGA ACTGCTGGCG GAAGAGTTGC GCCTGGCGCA GCAAAGCTTA AGCGAGATTA CCGGCGAGTT TACCTCCGAC GACCTGCTGG GACGGATTTT CTCCAGCTTC TGTATCGGCA AATAA
|
Protein sequence | MSHNDTIVAQ ATPPGRGGVG ILRISGLKAR DVAQEVLGKL PKPRYADYLP FKDVDGSALD QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTL PGVRIARPGE FSERAFLNDK LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE IDFLSDGKIE AQLNGVIADL DAVRTEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLRDASDE VERIGIERAW QEIEQADRVL FMVDGTTTDA VDPADIWPDF IARLPKNLPI TVVRNKADIT GETLGISEVN GHSLVRLSAR TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALAEAA EHLEQGKAQL LGAWAGELLA EELRLAQQSL SEITGEFTSD DLLGRIFSSF CIGK
|
| |