Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A4025 |
Symbol | ccmF |
ID | 6519884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 3895705 |
End bp | 3897636 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642748995 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_002116757 |
Protein GI | 194737706 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.999265 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCCTG AATACGGCCA CGCGCTGCTG TGCCTGGCGC TCGGCGTGGC GCTGCTGCTG TCCGTTTACC CGCTGTGGGG CGTGGCGCGC GGCGACGCGC GGATGATGGC GTCGGCCGGG GTGTTCGCCT GGCTGCTGTT TATCTGCGTG GCGGGCGCGT TTTTCGTGCT GGTGCACGCC TTTGTGGTTA ACGACTTCAC CGTGGCCTAT GTCGCCGGCA ACTCGAACAC GCAGCTGCCG GTGTGGTACC GGGTGGCCGC CACCTGGGGA GCGCACGAGG GCTCGCTGCT GCTGTGGGTG CTGCTGATGA GCGGCTGGAC CCTGGCGGTG GCGGTGTTCA GCCGGCCGGT GCCGGCGGAT ATCGTCGCCC GGGTGCTGGC GGTGATGGGA ATGGTCTGCG CCGGTTTTCT GGCGTTCATC CTGTTCACTT CCAGCCCGTT CGCCCGCACG CTGCCGGCCT TTCCGGTGGA GGGGCGCGAC CTGAACCCGC TGCTGCAGGA CCCGGGGCTG ATTTTCCACC CGCCGCTGCT GTACATGGGC TATGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTGAG CGGGCGTCTG GACAGCGCGT TCACCCGTTT TGCCCGCCCG TGGACGCTGG CGGCGTGGGT GTTCCTGACG CTGGGCATCG TGCTCGGCTC GGCGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG TTCTGGGACC CGGTGGAGAA CGCCTCCTTT ATGCCGTGGC TGGCGGGCAC CGCCCTGCTG CACTCGCTGG CGGTCACGGA ACAGCGCGCC GGCTTCAGGG CGTGGACGCT GCTGCTGTCC ATCTGCGCCT TCTCGCTGTG CCTGCTGGGC ACCTTCCTGG TGCGCTCCGG GGTGCTGGTG TCGGTGCACG CCTTCGCCTC CGACCCGGCA CGCGGGATGT TTATCCTCGC CTTTATGGTG CTGGTCACCG GCGGCTCGCT GCTGCTGTTC GCCGTGCGCG GGCACCGGGT GCGTTCGCGG GTGAACAACA CGCTGTGGTC GCGCGAGTCG CTGCTGCTCG GCAATAATGT CCTGCTGATG GCCGCCATGC TGGTGGTGCT GCTGGGCACC CTGCTGCCGC TGGTGCACAA ACAGCTGGGG CTGGGCAGCA TTTCGGTGGG GGAGCCGTTC TTTAACACCA TGTTCACCTG GCTGATGGTC CCCTTTGCCC TGCTGCTGGG GGTGGGGCCG CTGGTGCGCT GGGGCCGGGA CCGGCCGCGT AACATCAGGA AACTGCTGCT CACCGCCCTG GTCTCCACCC TGGTGCTGTC GGTACTTTTG CCATGGCTGC TGGAAGATAA AATCATCGCC ATGACGGCGG TGGGGATGGC GATGGCCTGC TGGATTGCGG TGCTGGCGGT GGCCGAAGCC GTACAGCGCG TGTCCCGCGG CACGAAAACC TCTCTCAGCT ACTGGGGAAT GGTGGCGGCG CACCTCGGGC TGGCGGTGAC GATTACCGGC ATCGCCTTCA GCCAGAATTA CAGCGTGGAG CGTGACGTGC GGATGCGGGC GGGCGACAGC GTGACCATTC ACGACTACCG CTTCACCTTC CGGGAGGTGC GGGACATCAC CGGCCCCAAC TACCGTGGCG GGGTGGCCCT CATCGGGGTG ACGCGCCACG GCGAGCCGGA GGCGGTGCTG CACGCGGAGA AACGGCTCTA CAACACCAGC CGGATGGTGA TGACCGAGGC GGCGATTGAC GGCGGGCTGA CCCGCGACCT GTACGCCGCG CTCGGGGAGG AGCTGGACAA CGGCGCGTGG GCCGTGCGCC TGTACTACAA ACCGTTTGTC CGCTGGATAT GGGCCGGGGG GCTGCTGATG GCGCTGGGCG GGCTGCTGTG CCTGGCGGAC CCGCGCTACC GCCGCCGTAA ACCATTGCCG GAGGCCGGAT GA
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Protein sequence | MMPEYGHALL CLALGVALLL SVYPLWGVAR GDARMMASAG VFAWLLFICV AGAFFVLVHA FVVNDFTVAY VAGNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTLAV AVFSRPVPAD IVARVLAVMG MVCAGFLAFI LFTSSPFART LPAFPVEGRD LNPLLQDPGL IFHPPLLYMG YVGFSVAFAF AIAALLSGRL DSAFTRFARP WTLAAWVFLT LGIVLGSAWA YYELGWGGWW FWDPVENASF MPWLAGTALL HSLAVTEQRA GFRAWTLLLS ICAFSLCLLG TFLVRSGVLV SVHAFASDPA RGMFILAFMV LVTGGSLLLF AVRGHRVRSR VNNTLWSRES LLLGNNVLLM AAMLVVLLGT LLPLVHKQLG LGSISVGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR NIRKLLLTAL VSTLVLSVLL PWLLEDKIIA MTAVGMAMAC WIAVLAVAEA VQRVSRGTKT SLSYWGMVAA HLGLAVTITG IAFSQNYSVE RDVRMRAGDS VTIHDYRFTF REVRDITGPN YRGGVALIGV TRHGEPEAVL HAEKRLYNTS RMVMTEAAID GGLTRDLYAA LGEELDNGAW AVRLYYKPFV RWIWAGGLLM ALGGLLCLAD PRYRRRKPLP EAG
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