Gene SeSA_A3915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3915 
Symbol 
ID6518377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp3787120 
End bp3787818 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content33% 
IMG OID642748888 
Productlipopolysaccharide core biosynthesis protein 
Protein accessionYP_002116651 
Protein GI194735458 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.852659 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00982926 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTATTG AAAAAAAGGT TAAAAACTAT ACCGTCTTTG TCAAAAAAGA CGGTGAAAAA 
TACATTGAGA TATTCAAAGA TTTTCTATCT TATAATCATC AGATTATTAA AGTCTTCCGT 
AATATAGAAG ATACAAAAGT TGTATTGATT AATACAGACT ACGGAAAATA TATTCTCAAA 
GTATTTAGTC CAAAAGTAAA AAATACTGAA CGATTTTTCA AATCGTTAGT AAAAGGAGAT 
TACTACGAAA AGCTTTTTCA TCAGACAGAT CGTGTGCGGC GTGAAGGGTT TGCGACGCTT 
AATGATTTTT ACCTGCTGGC GGAAATTAAA ACATTACGCT ATGTAAAAAC ATACGTGATG 
ATAATTGAGT ATATTGAAGG TATTGAACTT GTTGATATGC CAGAAATTTC TGACGAGGTG 
AGAGGGAAAA TCAAACAGTC GATATATTCC CTGCATCAGC ATGGTATGGT TTCGGGCGAT 
CCCCATAAAG GTAACTTTAT CCTGCAAGGA AATGAGATCA GAATTATCGA TTTGTCCGGA 
AAAAGACCTT CCAGGCAACG AAAAGCAAAG GATCGTATTG ATTTAGAAAG ACATTATGGT 
ATCAAAAATA ATGTGAGAGA TATCGGATTT TACTTATTGA TTTATAAGAA AAAACTTCGA 
AATTTCCTTC GTCGTATTAA GGGTAAGGAA AAGCGCTGA
 
Protein sequence
MIIEKKVKNY TVFVKKDGEK YIEIFKDFLS YNHQIIKVFR NIEDTKVVLI NTDYGKYILK 
VFSPKVKNTE RFFKSLVKGD YYEKLFHQTD RVRREGFATL NDFYLLAEIK TLRYVKTYVM 
IIEYIEGIEL VDMPEISDEV RGKIKQSIYS LHQHGMVSGD PHKGNFILQG NEIRIIDLSG 
KRPSRQRKAK DRIDLERHYG IKNNVRDIGF YLLIYKKKLR NFLRRIKGKE KR