Gene SeSA_A3912 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3912 
Symbol 
ID6518890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp3783645 
End bp3784859 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content39% 
IMG OID642748885 
ProductO-antigen ligase 
Protein accessionYP_002116648 
Protein GI194737936 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0464096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAACCA CATCATTAAC GTTAAATAAA GAGAAATGGA AGCCGATCTG GAATAAAGCG 
CTGGTTTTTC TTTTTGTTGC TACGTATTTT CTGGATGGTA TTACGCGTTA TAAACATTTG 
ATAATCATAC TTATGGTTAT CACCGCGATT TATCAGGTCT CACGCTCACC GAAAAGTTTC 
CCCCCTCTTT TCAAAAATAG CCTATTTTAT AGCATAGCAG TATTATCATT AATCCTTGTT 
TATTCCATAC TCATATCGCC AGATATGAAA GGAAGTTTCA AGGAATTTGA AAATACGGTA 
CTGGAGGGTT TCTTATTATA TACTTTATTA ATTCCCGTAC TATTAAAAGA TGAAACAAAA 
GAAACGGTTT CGAAAATAGT ACTTTTCTCC TTTTTAACAA GTTTAGGGCT TCGCTGCCTT 
GCAGAGAGTA TTCTGTATAT CGAGGACTAT AATAAAGGGA TTATGCCATT CATAAGCTAT 
GCGCATCGAC ATATGTCCGA TTCCATGGTT TTCTTATTTC CAGCATTATT GAATATTTGG 
CTGTTTAGAA AAAATGCAAT TAAGTTGGTT TTTTTGGTGC TTAGCGCTAT CTACCTTTTC 
TTTATCCTGG GAACCCTATC GCGAGGGGCA TGGTTGGCGG TGCTCATAGT AGGTGTTCTG 
TGGGCAATAC TGAACCGCCA ATGGAAGTTA ATAGGAGTTG GTGCCATTTT ATTAGCCATT 
ATCGGCGCTT TGGTTATCAC TCAACATAAT AACAAACCAG ACCCAGAACA TTTACTGTAT 
AAATTACAGC AGACAGATAG CTCATATCGT TATACTAATG GAACCCAGGG TACCGCGTGG 
ATACTGATTC AGGAAAACCC GATCAAGGGC TACGGCTATG GTAATGATGT GTATGATAGT 
GTTTATAATA AACGCGTTGT CGATTATCCA ACGTGGACCT TTAAAGAATC CATCGGTCCG 
CATAATACCA TCCTGTACAT CTGGTTTAGT GCTGGCATAT TGGGTCTGGC GAGCCTGGTC 
TATTTATACG GCGCTATCAT CAGGGAAACA GCCAGCTCTA CCTTCAGGAA AGTAGAGATA 
AGCCCCTACA ATGCTCATCT TTTGCTATTT TTATCTTTCA TTGGTTTTTA TATCGTTCGT 
GGTAATTTTG AACAGGTCGA TATTGCTCAA ATTGGTATCA TTACTGGTTT TCTGCTGGCG 
CTAAGAAATA GATAA
 
Protein sequence
MLTTSLTLNK EKWKPIWNKA LVFLFVATYF LDGITRYKHL IIILMVITAI YQVSRSPKSF 
PPLFKNSLFY SIAVLSLILV YSILISPDMK GSFKEFENTV LEGFLLYTLL IPVLLKDETK 
ETVSKIVLFS FLTSLGLRCL AESILYIEDY NKGIMPFISY AHRHMSDSMV FLFPALLNIW 
LFRKNAIKLV FLVLSAIYLF FILGTLSRGA WLAVLIVGVL WAILNRQWKL IGVGAILLAI 
IGALVITQHN NKPDPEHLLY KLQQTDSSYR YTNGTQGTAW ILIQENPIKG YGYGNDVYDS 
VYNKRVVDYP TWTFKESIGP HNTILYIWFS AGILGLASLV YLYGAIIRET ASSTFRKVEI 
SPYNAHLLLF LSFIGFYIVR GNFEQVDIAQ IGIITGFLLA LRNR