Gene SeSA_A3910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3910 
SymbolrfaF 
ID6516163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp3781606 
End bp3782652 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content58% 
IMG OID642748883 
ProductADP-heptose:LPS heptosyltransferase II 
Protein accessionYP_002116646 
Protein GI194737811 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0859] ADP-heptose:LPS heptosyltransferase 
TIGRFAM ID[TIGR02195] lipopolysaccharide heptosyltransferase II 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0446452 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATTT TGGTCATTGG CCCGTCCTGG GTGGGCGACA TGATGATGTC GCAAAGTCTC 
TATCGCACGC TTAAAGCGCG CTATCCCCAG GCGATAATCG ACGTGATGGC GCCAGCCTGG
TGCCGTCCGT TATTATCGCG TATGCCGGAA GTTAACGAGG CGATACCCAT GCCGCTGGGC
CACGGCGCGC TGGAAATCGG CGAGCGCCGT AGATTGGGCC ATAGCCTGCG TGAGAAGCGC
TACGATCGCG CCTGGGTGCT GCCAAATTCG TTTAAATCGG CGCTGATTCC TTTCTTTGCC
AATATCCCGC ACCGTACCGG CTGGCGCGGC GAAATGCGCT ATGGCCTGCT GAACGATGCG
CGCGTCCTTG ATAAAGACGC CTGGCCGCTG ATGGTGGAGC GCTACGTGGC GCTGGCCTAT
GACAAGGGCG TGATGCGCAC GGCGAAAGAT CTGCCGCAGC CGCTACTCTG GCCACAGCTC
CAGGTTAGCG AGGGTGAAAA GTCGCTGATG TGCAGCGACT TTTCACTATC TTCTGAACGT
CCTCTGATCG GCTTTTGCCC CGGCGCGGAA TTTGGCCCGG CAAAACGTTG GCCGCACTAT
CACTACGCCG AACTGGCAAA ACAGCTCATT AACGAAGGGT ATCAGGTCGT ACTGTTTGGC
TCGGCAAAAG ACCATGAAGC CGGAAATGAG ATCCTGGCGG CGCTGAATAG CGAGCAGCAG
GCATGGTGTC GCAACCTGGC GGGGGAAACC CAGCTGGAAC AGGCCGTCAT TCTGATAGCC
GCCTGTAAAG CCATCGTCAC TAACGATTCC GGGCTGATGC ACGTCGCGGC GGCGCTCGAC
CGCCCGCTGG TCGCCTTGTA TGGCCCAAGT AGCCCGGATT TCACGCCGCC GCTGTCTCAT
AAGGCCCGGG TGATTCGTCT CATTACGGGT TATCACAAAG TGCGTAAAGG TGATACGGCG
CAAGGCTATC ACCAGAGCCT GATCGATATC ACGCCGCAGC GGGTTCTGGA AGAGCTTCAT
TCGCTGTTGT CGGAAGAGGG CGTTTAA
 
Protein sequence
MKILVIGPSW VGDMMMSQSL YRTLKARYPQ AIIDVMAPAW CRPLLSRMPE VNEAIPMPLG 
HGALEIGERR RLGHSLREKR YDRAWVLPNS FKSALIPFFA NIPHRTGWRG EMRYGLLNDA
RVLDKDAWPL MVERYVALAY DKGVMRTAKD LPQPLLWPQL QVSEGEKSLM CSDFSLSSER
PLIGFCPGAE FGPAKRWPHY HYAELAKQLI NEGYQVVLFG SAKDHEAGNE ILAALNSEQQ
AWCRNLAGET QLEQAVILIA ACKAIVTNDS GLMHVAAALD RPLVALYGPS SPDFTPPLSH
KARVIRLITG YHKVRKGDTA QGYHQSLIDI TPQRVLEELH SLLSEEGV