Gene SeSA_A3789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3789 
SymbolyhiR 
ID6516336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp3651619 
End bp3652461 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content56% 
IMG OID642748768 
ProductDNA utilization protein YhiR 
Protein accessionYP_002116532 
Protein GI194735285 
COG category[R] General function prediction only 
COG ID[COG2961] Protein involved in catabolism of external DNA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.201983 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAGTT ATCGTCACAG CTTTCACGCT GGCAACCACG CCGACGTCCT TAAACATACC 
GTTCAGAGCC TGATCATCGA GTCGCTAAAA GAGAAAGAAA AACCGTTTCT CTATCTGGAC 
ACGCACGCGG GCGCGGGGCG TTATCAGTTG GGCAGCGAAC ATGCTGAACG TACCGGAGAG 
TATCTGGAAG GCATCGCCCG TATCTGGCAG CAGGACGATC TGCCCGCCGA ACTGGAACCG 
TATATTAGCG TCGTAAAACA TTTCAACCGC AGCGGGCAGT TACGCTACTA TCCGGGCTCC 
CCGTTAATCG CCCGCCAGTT GCTGCGTGAG CAGGACAGTC TGCAACTCAC GGAATTGCAT 
CCCAGCGACT TCCCACTGTT GCGCGCGGAG TTTCAAAAAG ACAACCGCGC CCGCGTGGAA 
CGCGCTGACG GCTATCAGCA ACTGAAAGCC AAATTGCCAC CGGTTTCCCG CCGCGGTCTG 
ATCCTCATTG ACCCGCCTTA TGAAATGAAA ACCGACTACC AGGCGGTAGT CAGCGGCATC 
AGCGAGGGTT ATAAACGTTT CGCCACTGGT ACATACGCGC TATGGTATCC GGTGGTGCTC 
CGCCAGCAAA TTAAGCGCAT GATTCATGAG CTGGAGGCCA CCGGCATCCG TAAAATCCTG 
CAAATTGAGC TGGCGATCCG CCCAGACAGC GATCAGCGCG GGATGACGGC GTCCGGTATG 
ATCGTGGTTA ACCCGCCGTG GAAACTGGAG CAGCAGATGA ACAACGTGCT ACCGTGGCTG 
CACAGCAGGT TGGCGCCAAA CGGTCACGGA CACACTTCGG TAAGCTGGAT CGTGCCGGAG 
TAA
 
Protein sequence
MLSYRHSFHA GNHADVLKHT VQSLIIESLK EKEKPFLYLD THAGAGRYQL GSEHAERTGE 
YLEGIARIWQ QDDLPAELEP YISVVKHFNR SGQLRYYPGS PLIARQLLRE QDSLQLTELH 
PSDFPLLRAE FQKDNRARVE RADGYQQLKA KLPPVSRRGL ILIDPPYEMK TDYQAVVSGI 
SEGYKRFATG TYALWYPVVL RQQIKRMIHE LEATGIRKIL QIELAIRPDS DQRGMTASGM 
IVVNPPWKLE QQMNNVLPWL HSRLAPNGHG HTSVSWIVPE