| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A3584 |
|---|
| Symbol | |
|---|
| ID | 6515653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 3460478 |
|---|
| End bp | 3463591 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642748570 |
|---|
| Product | AcrB protein |
|---|
| Protein accession | YP_002116340 |
|---|
| Protein GI | 194736548 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACT TTTTTATTAG ACGTCCTATT TTCGCCTGGG TTCTGGCCAT TATCCTGATG
ATGGCTGGCG CACTGGCAAT AATGCAACTT CCCGTTGCGC AGTATCCAAC CATTGCGCCG
CCAGCGGTTT CTATTTCTGC AACCTATCCT GGCGCGGATG CGCAGACGGT ACAGGATACG
GTTACTCAGG TTATCGAACA AAATATGAAC GGTATCGATA ACCTGATGTA TATGTCCTCT
ACCAGCGACT CTGCTGGTAG CGTGACCATC ACCCTGACCT TCCAGTCCGG AACCGATCCG
GATATCGCGC AGGTTCAGGT GCAAAATAAA TTGCAGCTCG CCACGCCTTT ACTGCCGCAA
GAAGTCCAGC AGCAGGGGAT TAGCGTTGAA AAGTCCAGCA GCAGCTTTTT GATGGTCGCC
GGGTTCGTCT CAGATAATCC GAACACTACC CAGGACGACA TCTCTGACTA TGTCGCCTCT
AACATTAAGG ATTCTATCAG CCGTCTGAAT GGTGTGGGCG ACGTTCAGCT ATTTGGCGCA
CAGTACGCCA TGCGTATCTG GCTGGATGCG AATCTGCTAA ATAAATACCA GCTCACGCCA
GTTGATGTCA TCAACCAGTT AAAAGTACAG AACGACCAGA TTGCGGCAGG CCAACTGGGC
GGCACGCCAG CATTACCGGG CCAGCAGCTT AACGCCTCAA TCATCGCCCA AACGCGTCTG
AAAGATCCGC AAGAGTTCGG CAAAGTTACG TTGCGTGTCA ATACCGACGG TTCTGTCGTC
CATCTCAAAG ATGTCGCGCG TATTGAGCTT GGCGGTGAAA ACTATAACGT TGTAGCGCGC
ATTAACGGTA AACCGGCCTC CGGTCTCGGT ATTAAACTGG CGACCGGCGC TAACGCGCTG
GATACCGCAA CCGCAATCAA AGCGAAACTG GCAGAACTGC AGCCTTTCTT CCCTCAGGGA
ATGAAGGTGG TTTATCCTTA TGACACAACG CCCTTCGTAA AAATATCTAT CCACGAAGTG
GTAAAAACGC TGTTTGAAGC GATTATTCTG GTGTTCCTGG TAATGTATCT GTTTTTACAG
AATATCCGGG CAACCCTGAT TCCTACCATC GCTGTTCCTG TCGTGTTGCT AGGCACTTTT
GCGGTACTCG CCGCCTTTGG CTATTCCATC AATACCCTGA CGATGTTTGG TATGGTACTA
GCGATAGGGC TGTTGGTTGA CGATGCGATA GTGGTCGTAG AAAACGTTGA ACGTGTAATG
ATGGAGGATA ACCTTTCTCC CCGAGAGGCG ACGGAAAAAT CCATGTCGCA GATTCAGGGA
GCGCTGGTTG GTATCGCGAT GGTACTGTCT GCGGTATTTA TCCCGATGGC CTTTTTTGGC
GGCTCGACCG GGGCAATTTA TCGCCAGTTC TCTATTACTA TTGTTTCAGC AATGGCGCTA
TCCGTTCTGG TTGCGTTGAT TCTGACGCCA GCGCTGTGCG CTACGCTACT TAAACCCGTA
TCTGCTGAAC ATCACGAGAA AAAAAGTGGC TTCTTTGGCT GGTTCAATAC CAGGTTTGAT
CACAGCGTTA ACCACTATAC TAACAGCGTA AGCGGTATCG TGCGTAATAC GGGTCGCTAT
CTCATTATCT ATCTACTTAT TGTAGTCGGA ATGGCGGTTC TGTTTTTACG CCTCCCAACC
TCCTTCCTGC CGGAAGAAGA TCAGGGGGTT TTCCTGACTA TGATTCAGCT CCCCTCTGGC
GCTACGCAAG AACGTACGCA GAAAGTGCTG GATCAAGTCA CTCATTACTA CCTGAATAAT
GAAAAAGCGA ACGTCGAAAG CGTGTTTACC GTAAACGGCT TTAGCTTTAG CGGTCAGGGA
CAAAACTCAG GGATGGCATT TGTCAGCCTT AAACCCTGGG AAGAGCGTAA CGGTGAAGAA
AATAGCGTCG AAGCCGTTAT CGCCAGAGCG ACACGCGCCT TCAGCCAGAT TCGCGACGGG
TTGGTGTTCC CCTTCAACAT GCCGGCAATT GTCGAGTTAG GTACCGCGAC AGGTTTCGAC
TTTGAGCTGA TTGATCAGGG AGGACTCGGT CACGATGCGT TAACAAAAGC GCGTAATCAA
CTCCTGGGTA TGGTCGCGAA GCATCCTGAT CTATTAGTGC GCGTACGCCC GAACGGGCTG
GAAGACACGC CACAGTTCAA GCTGGATGTC GATCAAGAAA AAGCGCAGGC GCTCGGTGTT
TCGCTGTCTG ATATCAACGA AACCATCTCC GCGGCGTTGG GCGGCTATTA CGTTAACGAC
TTTATCGATC GCGGACGAGT GAAAAAAGTA TACGTTCAGG CTGACGCTCA GTTCCGTATG
CTGCCGGGAG ATATCAACAA TCTTTATGTA CGCAGCGCCA ATGGCGAGAT GGTGCCCTTC
TCTACCTTTA GCTCAGCACG GTGGATTTAT GGTTCGCCAC GCCTGGAACG CTATAACGGG
ATGCCGTCAA TGGAACTGCT CGGTGAAGCA GCGCCCGGAC GAAGTACCGG TGAAGCCATG
TCGTTAATGG AAAATCTGGC TTCACAGCTG CCAAACGGTA TTGGCTATGA CTGGACAGGT
ATGTCGTATC AGGAACGGTT GTCAGGTAAC CAGGCGCCGG CGCTGTACGC AATCTCACTC
ATTGTCGTTT TCCTCTGCCT TGCCGCTCTG TATGAAAGCT GGTCAATTCC GTTCTCGGTA
ATGCTGGTCG TACCGCTCGG CGTGGTTGGC GCTCTGCTTG CAGCGTCATT GCGCGGTCTG
AACAATGACG TTTACTTCCA GGTTGGCTTG TTAACCACTA TTGGCCTTTC TGCTAAAAAC
GCCATCCTGA TTGTTGAGTT CGCCAAAGAT CTTATGGAGA AAGAAGGACG TGGATTGATT
GAAGCGACGC TGGAAGCATC CCGTATGCGT TTACGTCCTA TTCTAATGAC CTCGCTGGCC
TTTATTCTCG GGGTAATGCC GTTAGTTATC AGTCGTGGCG CAGGTAGTGG GGCACAGAAC
GCAGTAGGCA CAGGGGTTAT GGGGGGAATG TTAACCGCAA CCTTATTAGC TATCTTCTTC
GTGCCAGTAT TCTTCGTTGT TGTAAAACGC CGATTTAATC GCCATCATGA TTAA
|
|---|
| Protein sequence | MANFFIRRPI FAWVLAIILM MAGALAIMQL PVAQYPTIAP PAVSISATYP GADAQTVQDT
VTQVIEQNMN GIDNLMYMSS TSDSAGSVTI TLTFQSGTDP DIAQVQVQNK LQLATPLLPQ
EVQQQGISVE KSSSSFLMVA GFVSDNPNTT QDDISDYVAS NIKDSISRLN GVGDVQLFGA
QYAMRIWLDA NLLNKYQLTP VDVINQLKVQ NDQIAAGQLG GTPALPGQQL NASIIAQTRL
KDPQEFGKVT LRVNTDGSVV HLKDVARIEL GGENYNVVAR INGKPASGLG IKLATGANAL
DTATAIKAKL AELQPFFPQG MKVVYPYDTT PFVKISIHEV VKTLFEAIIL VFLVMYLFLQ
NIRATLIPTI AVPVVLLGTF AVLAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
MEDNLSPREA TEKSMSQIQG ALVGIAMVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMAL
SVLVALILTP ALCATLLKPV SAEHHEKKSG FFGWFNTRFD HSVNHYTNSV SGIVRNTGRY
LIIYLLIVVG MAVLFLRLPT SFLPEEDQGV FLTMIQLPSG ATQERTQKVL DQVTHYYLNN
EKANVESVFT VNGFSFSGQG QNSGMAFVSL KPWEERNGEE NSVEAVIARA TRAFSQIRDG
LVFPFNMPAI VELGTATGFD FELIDQGGLG HDALTKARNQ LLGMVAKHPD LLVRVRPNGL
EDTPQFKLDV DQEKAQALGV SLSDINETIS AALGGYYVND FIDRGRVKKV YVQADAQFRM
LPGDINNLYV RSANGEMVPF STFSSARWIY GSPRLERYNG MPSMELLGEA APGRSTGEAM
SLMENLASQL PNGIGYDWTG MSYQERLSGN QAPALYAISL IVVFLCLAAL YESWSIPFSV
MLVVPLGVVG ALLAASLRGL NNDVYFQVGL LTTIGLSAKN AILIVEFAKD LMEKEGRGLI
EATLEASRMR LRPILMTSLA FILGVMPLVI SRGAGSGAQN AVGTGVMGGM LTATLLAIFF
VPVFFVVVKR RFNRHHD
|
|---|
| |