Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A3079 |
Symbol | truD |
ID | 6516119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 2974558 |
End bp | 2975607 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642748100 |
Product | tRNA pseudouridine synthase D |
Protein accession | YP_002115877 |
Protein GI | 194735561 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.737275 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGT TTGACAATCT CACCTGGCTG CACGGAAAAC CACAAGGTAG CGGATTGCTG AAAGCGAATC CGGAAGATTT TGTGGTGGTT GAAGATTTAG GCTTTACGCC GGATGGTGAA GGCGAGCACA TTCTGCTGCG TATTTTGAAA AACGGTTGCA ATACCCGTTT TGTCGCTGAC GCGCTGGCGA AATTCCTGAA AATTCACGCT CGCGAAGTGA GCTTTGCCGG GCAAAAAGAT AAACACGCCG TTACCGAGCA GTGGCTGTGC GCGCGCGTGC CGGGGAAAGA GATGCCCGAT TTCAGCGCCT TTCAGCTGGA AGGTTGTAAA GTGCTGGAAT ACGCGCGTCA CAAGCGTAAG CTGCGTTTAG GCGCGCTGAA AGGCAATGCC TTTACGCTGG TGTTGCGTGA AATAAGCGAT CGCCGCGATG TCGAAACGCG ATTGCAGGCG ATTCGCGATG GCGGCGTGCC GAACTATTTT GGCGCACAGC GATTCGGCAT TGGTGGCAGC AACTTACAGG GCGCGCTGCG CTGGGCGCAA AGTAACGCGC CGGTGCGCGA TCGCAATAAA CGCAGTTTTT GGTTGTCGGC GGCACGTAGC GCGTTGTTTA ATCAAATTGT TCACCAGCGG CTGAAGAAAC CAGACTTTAA TCAAGTTGTT GACGGCGATG CGCTACAATT AGCGGGGCGT GGAAGCTGGT TCGTCGCGAC ATCTGAAGAA CTGCCTGAAT TGCAGCGCCG GGTAGACGAA AAAGAGCTGA TGATTACAGC GTCGTTGCCG GGCAGCGGAG AGTGGGGAAC ACAGCGTGCG GCGCTGGCGT TTGAGCAAGA TGCCATTGCC CAGGAAACGG TGTTGCAATC GCTGTTGCTG CGCGAAAAAG TAGAGGCGTC GCGCAGAGCG ATGCTGCTTT ATCCGCAACA ATTAAGCTGG AACTGGTGGG ATGACGTTAC CGTCGAGTTA CGTTTCTGGC TGCCCGCAGG CAGTTTTGCC ACCAGCGTAG TAAGGGAACT GATCAACACA ATGGGTGATT ATGCGCATAT TGCTGAGTAA
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Protein sequence | MTEFDNLTWL HGKPQGSGLL KANPEDFVVV EDLGFTPDGE GEHILLRILK NGCNTRFVAD ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD FSAFQLEGCK VLEYARHKRK LRLGALKGNA FTLVLREISD RRDVETRLQA IRDGGVPNYF GAQRFGIGGS NLQGALRWAQ SNAPVRDRNK RSFWLSAARS ALFNQIVHQR LKKPDFNQVV DGDALQLAGR GSWFVATSEE LPELQRRVDE KELMITASLP GSGEWGTQRA ALAFEQDAIA QETVLQSLLL REKVEASRRA MLLYPQQLSW NWWDDVTVEL RFWLPAGSFA TSVVRELINT MGDYAHIAE
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