Gene SeSA_A3075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3075 
SymbolnlpD 
ID6519594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp2971887 
End bp2973020 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content52% 
IMG OID642748097 
Productlipoprotein NlpD 
Protein accessionYP_002115874 
Protein GI194737503 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.567477 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCGG GAAGCCCAAA ATTCACCGTT AGTCGCATTG CGGCACTATC ACTGGTTTCA 
CTATGGCTGG CAGGTTGTAC CAGTTCGTCA AACCCTCCGG CGCCGGTCAC GTCTGTGGAC 
AGTGGGTCGT CATCAAATAC CAATTCCGGG ATGTTGATCA CACCGCCGCC AAAAATGGGC 
GCGACGACGC AACAAACGCC GCAACAAGCG CCGCAAATTC AACCCGTTCA GCGTCCTGTA 
ACGCAGCCCA TGCAAACTCA ACCGGTCACG GAACAACCCG TGCAGATGGA AAATGGGCGA 
ATCGTATACA ATCGCCAGTA TGGGAATATT CCGAAAGGTA GCTATACGGG TGGCAGTACT 
TACACCGTGA AAAAGGGTGA TACGCTTTTT TACATCGCCT GGATTACCGG GAACGATTTC 
CGCGATCTGG CCCAGAGAAA CAGTATTTCT GCCCCGTATA GCCTGAATGT AGGGCAAACT 
TTGCAAGTTG GTAACGCATC CGGTACGCCA ATTACTGGCG GAAATGCGAT CACCCAGGCG 
GATGCAGCAC AGCAAGGAGT TGTGACCAGG TCTGCACAAA ATTCCACCGT TGCAGTTGCG 
TCTCAACCAA CAATTACGTA TTCTGAGCAC TCAGGTGAAC AAAGTGCTAA CAAAATGTTG 
CCAAACAACA AGCCTGCTGG GACGGTTGTC ACAGCGCCTG TAACGGCACC AACGGTAAGC 
ACGACCGAAC CAAATGCAAG CAGTACGTCA ACCAGCGCGC CGATTTCCGC ATGGCGCTGG 
CCGACGGATG GCAAAGTGAT CGAAAACTTT GGCGCTTCCG AAGGGGGCAA TAAAGGGATC 
GACATTGCAG GCAGTAAGGG ACAGGCTATC GTCGCAACCG CTGATGGGCG CGTCGTATAT 
GCCGGTAACG CACTGCGTGG TTACGGTAAT CTTATTATCA TCAAACATAA CGATGATTAC 
CTGAGTGCCT ACGCCCATAA TGATACGATG CTGGTCCGGG AACAACAGGA AGTTAAGGCG 
GGGCAAAAAA TCGCTACTAT GGGTAGCACC GGCACCAGCT CTACACGCTT GCATTTTGAA 
ATTCGTTACA AGGGGAAATC CGTAAACCCG CTGCGTTATT TACCGCAGCG ATAA
 
Protein sequence
MSAGSPKFTV SRIAALSLVS LWLAGCTSSS NPPAPVTSVD SGSSSNTNSG MLITPPPKMG 
ATTQQTPQQA PQIQPVQRPV TQPMQTQPVT EQPVQMENGR IVYNRQYGNI PKGSYTGGST 
YTVKKGDTLF YIAWITGNDF RDLAQRNSIS APYSLNVGQT LQVGNASGTP ITGGNAITQA 
DAAQQGVVTR SAQNSTVAVA SQPTITYSEH SGEQSANKML PNNKPAGTVV TAPVTAPTVS 
TTEPNASSTS TSAPISAWRW PTDGKVIENF GASEGGNKGI DIAGSKGQAI VATADGRVVY 
AGNALRGYGN LIIIKHNDDY LSAYAHNDTM LVREQQEVKA GQKIATMGST GTSSTRLHFE 
IRYKGKSVNP LRYLPQR