Gene SeSA_A3029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3029 
Symbol 
ID6517430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp2927061 
End bp2928722 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content43% 
IMG OID642748052 
Productinvasion protein regulator 
Protein accessionYP_002115829 
Protein GI194736966 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0229765 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACATT TTAATCCTGT TCCTGTATCG AATAAAAAAT TCGTCTTTGA TGATTTCATA 
CTCAACATGG ACGGCTCCCT GCTACGCTCA GAAAAGAAAG TCAATATTCC GCCAAAAGAA 
TATGCCGTTC TGGTCATCCT GCTCGAAGCC GCCGGCGAGA TTGTGAGTAA AAACACCTTA 
CTGGACCAGG TATGGGGCGA CGCGGAAGTT AACGAAGAAT CTCTTACCCG CTGTATTTAT 
GCCTTACGAC GTATTCTGTC GGAAGATAAA GAGCATCGTT ACATTGAAAC ACTGTACGGA 
CAGGGCTATC GGTTTAATCG TCCGGTCGTA GTGGTGTCTC CGCCAGCGCC GCAACCTACG 
ACTCATACAT TGGCGATACT TCCTTTTCAG ATGCAGGATC AGGTTCAATC CGAGAGTCTG 
CATTACTCTA TCGTGAAGGG ATTATCGCAG TATGCGCCCT TTGGCCTGAG CGTGCTACCG 
GTGACCATTA CGAAGAACTG TCGCAGTGTT AAAGATATTC TTGAGCTCAT GGATCAATTA 
CGCCCCGATT ATTATATCTC CGGACAGATG ATACCCGATG GCAATGATAA TATTGTACAG 
ATCGAGATAG TTCGGGTTAA AGGTTATCAC CTGCTGCACC AGGAAAGCAT TAAGTTGATA 
GAACACCAAC CCGCTTCTCT CTTGCAAAAC AAAATTGCTA ATCTTTTGCT CAGATGTATT 
CCCGGGCTTC GCTGGGACAC AAAGCAGGTT AGCGAGCTAA ATTCGATTGA CAGTACTATG 
GTTTACTTAC GCGGTAAGCA TGAGTTAAAT CAATATACCC CCTATAGCTT ACAGCAAGCG 
CTTAAATTGC TGACTCAATG CGTTAACATG TCGCCAAACA GCATTGCGCC TTACTGTGCG 
CTGGCAGAAT GCTACCTCAG CATGGCGCAA ATGGGGATTT TTGATAAACA AAACGCCATG 
ATCAAAGCTA AAGAACATGC GATTAAGGCG ACAGAGCTGG ACCACAATAA TCCACAAGCT 
TTAGGATTAC TGGGGCTAAT TAATACGATT CATTCAGAAT ACATCGTCGG GAGTTTGCTA 
TTCAAACAAG CTAACTTACT TTCGCCCATC TCTGCAGATA TTAAATATTA TTATGGCTGG 
AATCTCTTCA TGGCTGGTCA GTTGGAGGAG GCCTTACAAA CGATTAACGA GTGTTTAAAA 
TTGGATCCAA CGCGCGCAGC CGCAGGGATC ACTAAGCTGT GGATTACCTA TTATCATACC 
GGTATTGATG ATGCTATACG TTTAGGCGAT GAATTACGCT CACAACACCT GCAGGATAAT 
CCAATATTAT TAAGTATGCA GGTTATGTTT CTTTCTCTTA AAGGTAAACA TGAACTGGCA 
CGAAAATTAA CTAAAGAAAT ATCCACGCAG GAAATAACAG GACTTATTGC TGTTAATCTT 
CTTTACGCTG AATATTGTCA GAATAGTGAG CGTGCCTTAC CGACGATAAG AGAATTTCTG 
GAAAGTGAAC AGCGTATAGA TAATAATCCG GGATTATTAC CGTTAGTGCT GGTTGCCCAC 
GGCGAAGCTA TTGCCGAGAA AATGTGGAAT AAATTTAAAA ACGAAGACAA TATTTGGTTC 
AAAAGATGGA AACAGGATCC CCGCTTGATT AAATTACGGT AA
 
Protein sequence
MPHFNPVPVS NKKFVFDDFI LNMDGSLLRS EKKVNIPPKE YAVLVILLEA AGEIVSKNTL 
LDQVWGDAEV NEESLTRCIY ALRRILSEDK EHRYIETLYG QGYRFNRPVV VVSPPAPQPT 
THTLAILPFQ MQDQVQSESL HYSIVKGLSQ YAPFGLSVLP VTITKNCRSV KDILELMDQL 
RPDYYISGQM IPDGNDNIVQ IEIVRVKGYH LLHQESIKLI EHQPASLLQN KIANLLLRCI 
PGLRWDTKQV SELNSIDSTM VYLRGKHELN QYTPYSLQQA LKLLTQCVNM SPNSIAPYCA 
LAECYLSMAQ MGIFDKQNAM IKAKEHAIKA TELDHNNPQA LGLLGLINTI HSEYIVGSLL 
FKQANLLSPI SADIKYYYGW NLFMAGQLEE ALQTINECLK LDPTRAAAGI TKLWITYYHT 
GIDDAIRLGD ELRSQHLQDN PILLSMQVMF LSLKGKHELA RKLTKEISTQ EITGLIAVNL 
LYAEYCQNSE RALPTIREFL ESEQRIDNNP GLLPLVLVAH GEAIAEKMWN KFKNEDNIWF 
KRWKQDPRLI KLR