Gene SeSA_A2939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A2939 
Symbol 
ID6517493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp2851578 
End bp2852255 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content56% 
IMG OID642747965 
ProductDNA-binding transcriptional regulator CsiR 
Protein accessionYP_002115747 
Protein GI194736700 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.150864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCC TTTCCCAACC GACGGCCATA GATGGCTATC GCTGGCTTAA AAATGACATT 
ATTCGCGGCA CTTATCAGCC GGATGAGAAA CTGCGGATGA GTTTATTAAC CGCCCGCTAT 
GCGCTCGGCG TAGGGCCGCT GCGCGAGGCG CTGTCGCAAC TGGTGGCGGA ACGGCTGGTC 
ACCGTGGTGA ATCAAAAAGG CTATCGCGTG GCATCCATGT CAGAGGCGGA ACTCCTCGAT 
ATTTTTGACG CGCGCGCCAA TATGGAAGCG ATGCTGGTAC GCCTGGCGAT TGAACGCGGC 
GATGATGCGT GGGAGGCGGA GATCCTGGCG CGAGCGCATA TGCTCAGTAA ACTGGAAGCC 
AGCGATGCCA GTGAACATAT GCTCGATGAA TGGGACCAGC GCCACCAGGC GTTCCATTCC 
GCCATTGTCG CCGGGTGCGG CTCCCACTAT CTGCTACAGA TGCGTGAACG CTTATTTGAC 
CTGGCGGCCC GCTACCGCTT TATTTGGTTA CGTGAAACCG TTCTGTCCGT CGAGATGCTG 
GAAGATAAAC ATATTCAGCA TCACACGCTA ACCGAAGCGA TACTGGCGCG CGAGGCGGCA 
CGCGCCAGCG AATTAATGCG TCAGCATTTG CTGACGCCGA TTCCCATTAT TCGCCAGGCG 
ATGGCAGGAA AAATGTAG
 
Protein sequence
MTALSQPTAI DGYRWLKNDI IRGTYQPDEK LRMSLLTARY ALGVGPLREA LSQLVAERLV 
TVVNQKGYRV ASMSEAELLD IFDARANMEA MLVRLAIERG DDAWEAEILA RAHMLSKLEA 
SDASEHMLDE WDQRHQAFHS AIVAGCGSHY LLQMRERLFD LAARYRFIWL RETVLSVEML 
EDKHIQHHTL TEAILAREAA RASELMRQHL LTPIPIIRQA MAGKM