Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A2938 |
Symbol | gabP |
ID | 6518331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 2850136 |
End bp | 2851536 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642747964 |
Product | gamma-aminobutyrate transporter |
Protein accession | YP_002115746 |
Protein GI | 194736084 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.111546 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGCAAT TGTCAGAATC ACATGCATTA GGGGGCGGGC TGAAATCACG CCACGTCACC ATGTTATCGA TCGCCGGCGT CATCGGCGCC AGCCTGTTTG TCGGCTCCAG CGTGGCGATT GCGGAGGCCG GCCCTGCGGT ACTGCTGGCC TATCTGTTCG CAGGACTTTT AGTCGTCATG ATTATGCGAA TGCTGGCTGA AATGGCCGTC GCCACGCCGG ATACCGGTTC TTTTTCCACC TATGCGGATA AAGCGATCGG CCCCTGGGCC GGGTATACCA TCGGCTGGTT ATACTGGTGG TTTTGGGTGC TGGTTATTCC GCTGGAGGCC AATATTGCCG CCATTATTCT GAATTCATGG ATACCGGGTA TTCCGGTGTG GCTATTTTCA TTAGTGATTA CGCTTGCCTT AACCGGAAGC AATTTATTGA GCGTCAAAAA TTACGGCGAA TTCGAATTCT GGCTGGCGCT ATGTAAAGTG ATTGCTATCC TGGCGTTTAT CGCGCTGGGC GCGACGGCGA TTAGCGGTTT TTATCCATAT GCCGAGGTAA GCGGTATCTC CCGGCTATGG GATCACGGCG GTTTTATGCC TAACGGCTTC GGCGCGGTGT TAAGCGCCAT GTTGATCACC ATGTTCTCTT TTATGGGCGC GGAAATCGTC ACTATTGCTG CCGCGGAATC CGATACGCCG GATAAACATA TCGTACGCGC CACCAATTCT GTTATCTGGC GAATTTCCAT CTTTTACCTG TGTTCCATTT TTGTGGTGGT GGCGCTGATC CCGTGGAATA TGCCGGGTCT GAAAAGTGTA GGTTCGTACC GTTCGGTACT GGAGCTGCTT CATATTCCGC ACGCAAAATT CATTATGGAC TGCGTGATTT TGTTGTCGGT GACCAGTTGT CTGAACTCCG CATTATATAC CGCCTCCCGG ATGCTCTATT CCCTTAGTCG CCGCGGCGAT GCGCCTGCGA TAATGGGAAA AACTAACCGT AGCAAAACGC CCTGGGTGGC GGTTCTCCTC TCTACCGGCG CGGCCTTTTT AACCGTTGTC GTCAATTATT ACGCCCCGGC AAAAGTGTTT AAATTTCTTA TCGACAGTTC TGGCGCCATC GCGCTGCTGG TCTATCTGGT GATTGCGATT TCGCAATTGC AGATGCGTAA AATTCTGCTG GCGCAGGGCG GAGAAATTAA GTTGAAAATG TGGCTTTATC CGTGGCTCAC CTGGCTGGTT ATCGGCTTTA TCTGCTTTGT CCTGGTGGTG ATGCTGTTTC GACCGGCACA ACAACTAGAA GTCATTTCGA CGGGGCTGTT AGGGCTGGGC ATAATAGGTA CTGTACCCAT TATGTCTCGC TGGAAAAAAC TGATAAGGTG GCAAAAAGCC CCCCTGCAAA ACCTACGTTA G
|
Protein sequence | MGQLSESHAL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM IMRMLAEMAV ATPDTGSFST YADKAIGPWA GYTIGWLYWW FWVLVIPLEA NIAAIILNSW IPGIPVWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIALG ATAISGFYPY AEVSGISRLW DHGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP DKHIVRATNS VIWRISIFYL CSIFVVVALI PWNMPGLKSV GSYRSVLELL HIPHAKFIMD CVILLSVTSC LNSALYTASR MLYSLSRRGD APAIMGKTNR SKTPWVAVLL STGAAFLTVV VNYYAPAKVF KFLIDSSGAI ALLVYLVIAI SQLQMRKILL AQGGEIKLKM WLYPWLTWLV IGFICFVLVV MLFRPAQQLE VISTGLLGLG IIGTVPIMSR WKKLIRWQKA PLQNLR
|
| |