Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A2770 |
Symbol | pbpC |
ID | 6517531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 2667660 |
End bp | 2669975 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642747808 |
Product | penicillin-binding protein 1C |
Protein accession | YP_002115593 |
Protein GI | 194734438 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACGGTT GGCGTGGTAA ACGTGACCGC TGGCTGTGGC TGGCGGGCGC GCCGCTTTTT ATTTTCCTGG CGTTATGGGC GGCGGATAAA CTCTGGCCGC TGCCGCTCAA TGAGGTCCAT CCTGCGCGGG TCGTGGTAGC CCATGACGGT ACGCCGCTGT GGCGCTTTGC CGACGCCGGG GGGATCTGGC GTTATCCGGT GACGATTGAA GAGGTCTCTC CCCGTTACCT GGAGGCCTTA ATCAATTACG AAGATCGCTG GTTCTGGCGG CACCCTGGCG TTAACCCTTT CTCCGTCGCG CGCGCGGCAT GGCAGGATCT TACCGCCGGG CGCGTTATTT CCGGCGGCAG TACGCTGACT ATGCAGGTGG CGAGACTGCT GGACCCACAT TCGCGCACGT TCGGCGGTAA AATCCGCCAG CTTTGGCGCG CCCTCCAGCT TGAATGGCAT TTGTCCAAGC GCGATATCCT GACGCTGTAC CTGAACCGCG CGCCGTTCGG CGGCACGCTA CAGGGTATTG GCGCTGCAAG CTGGGCCTAC TTCGGCAAGC CGCCCGCGCG CCTGAGTTAC GCTGACGCGG CGCTGCTGGC CGTATTGCCG CAGGCGCCGA GCCGGTTACG CCCCGACCGC TGGCCTGCGA GAGCCGAAGC GGCACGAAAT AAAGTGCTGG ATCGGATGGC GGCGCAGGGC GTCTGGCCTG CCGAAACGGT ACGCGAGTCG CGTGAAGAGC CGGTCTGGCT GGCGCCGCGT CAAATGCCGC AACTGGCGCC GCTTTTTGCC CGAATGATGT TGAGTAAAAG CCAGAACGAC AAAATTGTGA CCACGCTGGA CGCCGGGTTG CAGCGGCAAC TGGAAGATCT GGCGCGGGCA TGGAAAGGGC GGCTGCCGGC ACGCAGTTCG TTGGCGATGA TCGTCGTCGA TCATACCGAT ATGAGCGTGC GCGGCTGGGT AGGATCGGTA GACCTTAATG ACGACAGCCG TTTTGGTCAT GTCGACATGG TAACGGCGAT CCGATCGCCG GGATCGGTAC TCAAACCCTT TGTGTACGGT CTGGCGCTGG ATGACGGCTT GATCCATCCC GCATCATTAT TACAGGACGT TCCGCGCCGC ACCGGAGATT ACCGCCCGGG AAACTTCGAC AGCGGATTTC ACGGCCCGGT CAGCATGAGC GACGCGCTGG TACGCTCGCT GAATCTGCCT GCCGTTCAGG TGCTTGAAGT CTATGGGCCG AAACGATTTG CGGCAAAACT GCGTAACGTC GGCCTGCCGC TATATTTGCC TGCTGGCGCG GTGCCCAATC TTTCGCTGAT TTTGGGCGGC GCGGGCGCGC GGCTTGACGA GATGGCGGCG GCATACAGCG CGTTCGCTCG TCATGGGAAA GCGGCGAAAC TACGGTTACA GCCGGACGAT CCGCTGTCGG AAAGACCATT AATGTCGCCG GGAGCGGCGT GGATCATTCG ACGGATTATG GCGGATGAAG CGCAACCCTT GCCGGATAAC GCGCTGCCGC GCATTGTGCC GTTGGCGTGG AAAACCGGCA CCAGCTACGG CTATCGCGAT GCGTGGGCTA TTGGCGTTAA CGCGCGCTAT ATCATCGGTA TCTGGACAGG CAGGCCCGAC GGCACGCCTG TGGTGGGGCA ATTTGGTTTT GCCAGCGCGG TGCCATTGCT TAACCAGGTC AATAATCTGT TACTGGCGCA TACGGGACGC CTGCCGGAAG ATCCGCGTCC GCAGACGGTA AGCCGCGGCG TCATTTGCTG GCCGGGCGGA CAGACTCTGC CTGCCGGAGA CAGCAACTGT CGCCGCCGAC TGGCGACATG GCTTCTCGAT GACAGCCAGC CGCCCACGCT GCTGTTACCT GAGCAGGAAG ACATCAACGG TATTCGTTTC CCGGTCTGGC TGGATGATAC GGGGCGGCGT GTCGCTGCCG ACTGTCCGCA GGCGCGTGCG CATACGTTTA TCGTCTGGCC GCGGCCGCTG GAGCCGTGGC TGCCGCCTGC GGAAAGACGT AGCGCCCGCT TGCCAGCGGC GTCCGACCAC TGTCCGCCGC TGCAGGGCAA TGATGCCGCG CCGTTAATGC TGTCAGGAGT GAGGGATGGC GCGGTGATCA GGCAATTGCC AGGCCAGGAA AACGTCACGC TGCCCGTCTC GACTACCGGC GGTAAAGGGC GTCGCTGGTG GTTTTTAAAT GGCGAACCTG TTAATGGCGA AAATAATCGT CTTTCTTTAT TACTCAATAT CGCTGGACGT TATCAACTTG TCGTAATGGA TGAGTCCGGT CAGGTTGCAG CGGTTAATTT TGAATTAATA CGTTAA
|
Protein sequence | MNGWRGKRDR WLWLAGAPLF IFLALWAADK LWPLPLNEVH PARVVVAHDG TPLWRFADAG GIWRYPVTIE EVSPRYLEAL INYEDRWFWR HPGVNPFSVA RAAWQDLTAG RVISGGSTLT MQVARLLDPH SRTFGGKIRQ LWRALQLEWH LSKRDILTLY LNRAPFGGTL QGIGAASWAY FGKPPARLSY ADAALLAVLP QAPSRLRPDR WPARAEAARN KVLDRMAAQG VWPAETVRES REEPVWLAPR QMPQLAPLFA RMMLSKSQND KIVTTLDAGL QRQLEDLARA WKGRLPARSS LAMIVVDHTD MSVRGWVGSV DLNDDSRFGH VDMVTAIRSP GSVLKPFVYG LALDDGLIHP ASLLQDVPRR TGDYRPGNFD SGFHGPVSMS DALVRSLNLP AVQVLEVYGP KRFAAKLRNV GLPLYLPAGA VPNLSLILGG AGARLDEMAA AYSAFARHGK AAKLRLQPDD PLSERPLMSP GAAWIIRRIM ADEAQPLPDN ALPRIVPLAW KTGTSYGYRD AWAIGVNARY IIGIWTGRPD GTPVVGQFGF ASAVPLLNQV NNLLLAHTGR LPEDPRPQTV SRGVICWPGG QTLPAGDSNC RRRLATWLLD DSQPPTLLLP EQEDINGIRF PVWLDDTGRR VAADCPQARA HTFIVWPRPL EPWLPPAERR SARLPAASDH CPPLQGNDAA PLMLSGVRDG AVIRQLPGQE NVTLPVSTTG GKGRRWWFLN GEPVNGENNR LSLLLNIAGR YQLVVMDESG QVAAVNFELI R
|
| |