| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A2358 |
|---|
| Symbol | |
|---|
| ID | 6518866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 2230068 |
|---|
| End bp | 2233064 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642747420 |
|---|
| Product | mase1 domain family |
|---|
| Protein accession | YP_002115213 |
|---|
| Protein GI | 194735930 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3447] Predicted integral membrane sensor domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.922212 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAATGA GTAAACCATC CCAACATGTT TTCGTTACCG TCCCCCACCC GCTATTGCGT
CTGGTCAGTT TAGGCCTGGT CGCGTTTGTC TTTACGCTCT TTTCGCTCGT ATTATCGCGT
GTCGGCACCC AACTCGCGCC GCTGTGGTTC CCCACCTCCA TTATGATGGT CGCGTTTTAC
CGCCATGCGG GCCGTCTGTG GCCAGGGATC GCGGTCGCCT GCTCGCTCGG CAGCATCGGC
GCCTCACTGA CTTTATTTCC TGCCGCCTCG CTTAACTTTA GCTGGACGGC AATAAATATT
ATCGAGGCGG CCACTGGCGC GATACTGCTG CGAAAACTGC TCCCCAGCTA CAACCCCTTA
CAAAATTTGA ATGACTGGTT TCGTCTGGCT ATCGGCAGCG CCGTGATTCC GCCGCTACTC
GGCGGCATGT TATTTTGGCT GATAGCGCCG GAAGCGGTCG CCTCGAAAGC GTTTCTGATT
TGGGTATTAT CGGAAGCCAT CGGCGCGCTG ACGCTGGTAC CGTTAGGTTT ACTGTTTAAA
CCACACTATC TGTTGCGTCA TCGCGACCCG CATCTGTTGC TGGAAACGCT ATTGACGCTG
GTCATTACGC TGGCGCTAAG CTGGCTCGCT ATGCGCTATA TTCCGTGGCC GTTTACGTGC
GTTATCGTCC TGTTGATGTG GAGTGCGGTG CGCCTGCCGC GAATGGAGGC GTTTTTAATT
TTTTTAGCTA CCGTTATCGT GGTCTCGCTC ATGCTGGCCA ATGACCCCAC GCTGCTCGCC
ACGCCGAAAA CCGACGTGAT GGTCAATATG CCGTGGCTAC CTTTTTTAAT GATCCTGCTG
CCTGCCAATA TGATGACGAT GGTGATGTAC GCGTTTCGCA CGGAACGCAA ACATATCACC
GAGAGCGAAT CCCGCTTTCG CAACGCGATG GAGTATTCCG CCATTGGTAT GGCGCTGGTC
GGTACGGAGG GTCAGTGGCT ACAGGTCAAT AAATCTCTGA GCCATTTTCT TGGCTATAGC
CAGGATGAAT TACGCACGAT GACATTTCAG CAATTGACCT GGCCGGAAGA CCTGAATAAT
GACCTTGAAC AGCTAAACAT GCTGGTGCGC GGCGACATCA ATAGCTATTC CATGGAAAAA
CGCTACTACA CCCGCAACGG CGATGTCGTC TGGGCGCTAC TGGCCGTCTC GCTGGTTCGT
CATAAAGACA ATAAACCTCT CTATTTTATT GCTCAGATTG AAGATATTAA CGATCTCAAG
CAAAGCGAGC AGGAAAACCA GCGGTTGATG GAGCGTATTA CACAGGCGAA CGACGCGCTG
TTTCAGGAAA AAGAACGGTT GCACATCACG CTTGACTCTA TCGGAGAAGC GGTGGTGTGT
ATTGATGTCG CGATGAATAT CACCTTTATG AACCCGATCG CCGAGAAGAT GAGCGGCTGG
CGGCAGGAGG ATGCTTTAGG CGCGCCATTA TTAACGGTTC TGCGCATTAC GTCAGGTAAT
AAGGGGCCGC TGCTGGAGGA TATTTATCGC GCCGACAGGT CGCGATCGGA CATGGAACAG
GAGATAGTGC TCCATTGTCA TAACGGCGGC AGCTACGATA TTCATTACAG TATCACGCCG
CTCAGTACGC TTGACGGCGA TAAGATTGGT TCGGTTCTGG TTATCCAGGA CGTTACCGAA
TCACGAAAAA TGTTACGCCA GCTCAGCTAC AGCGCAACGC ATGACGCCCT CACCCATCTT
GCCAACCGCG CCAGTTTTGA AAAGCAGCTT CAACAGCGCC TGCAAACAAT ACAGGAATCG
CCTCAACATC ATGCGCTGGT GTTTATCGAT CTGGACCGTT TTAAAGCGGT TAACGACAGC
GCGGGACATG CCGCCGGCGA TGCCTTATTG CGCGAACTCG CGTCACTGAT GCTCAGTATG
CTTCGATCTG GCGATCTCCT GGCCCGTCTG GGTGGCGATG AGTTTGGCCT GTTGCTGCCG
GATTGTAATA GTGACAGCGC GCGCTTTATC GTGACGCGGC TTATCAACGC CGTTAATGAA
TATCACTTTA TGTGGGAAGG ACGCCTGCAT CGGATCGGCG CCAGCGCCGG GATCACAATG
ATAAATGAAC ATAACTGCCA GCTCACAGAG GTCGTGTCTC AGGCCGATAT AGCCTGCTAC
GCCGCGAAAA ATAGCGGTCG CGGCCGTCTG ACCGTGTACG AACCGCAGCA CGCATTAACC
TCCTCAAAGG GAATGATGCC GCTGGAAGAA CAGTGGCATA TGATTAAAAA TAACCACCTG
CTGATGCTTG CCAGAAACGT CGCGCCGCCG CGTACGCCGG AGGCCACCAG CTTTTGGCTG
GTCTCACTCA GGCTGTGGAC CAGCGAAGGG GAAGTGATGG AAGAGCGCGC GTTCCGGGCA
GGATTAGCCG ACTCCGCGCT GCATCACGCG CTTGACCGAC GGGTATTCCA TGAGTTTTTC
CACCATGCGG CGACCGCCGT CGCCAGCAAG GGATTAAGCG TTGCGCTGCC GCTGTCCGCC
GCAGGATTAT ACAGCGCGAC CCTTATTGAT GAGCTGCTGG AACAACTGGA GCATAGCCCA
CTGCCGCCAC GGTTATTACA TCTGATTATC CCGGCTGACG TTATCGTTAA GCAGGCGCAG
ACCGCCGCTG CGACTCTGCG AAAACTGCGA CAACGCGGCT GCCAGGTGAT TCTCAGCCAT
GTCGGGCGCG ATTTACAGCT GTTTAATTTA CTGACCCCGC ATATCGCTGA TTATTTACTG
CTGGATAGCG ACCTTATCGC CAACGTTCAT GAGAGTTTAA TGGATGAAAT GCTGACCTCG
ATCATCCAGG GACACGCCCA GCATCTGGAC ATCAAAACGC TCGCCGGGCC GGTACAAAAC
CCACAGGTGC TGGATACGCT CTCCCGTATT GGCGTGGATC TGATTTATGG CGACACTATC
GCCGAAGCGC AACCGTTGGA TTTGTTACTG AATACCAGCT ATTTCGCTAT CCATTGA
|
|---|
| Protein sequence | MVMSKPSQHV FVTVPHPLLR LVSLGLVAFV FTLFSLVLSR VGTQLAPLWF PTSIMMVAFY
RHAGRLWPGI AVACSLGSIG ASLTLFPAAS LNFSWTAINI IEAATGAILL RKLLPSYNPL
QNLNDWFRLA IGSAVIPPLL GGMLFWLIAP EAVASKAFLI WVLSEAIGAL TLVPLGLLFK
PHYLLRHRDP HLLLETLLTL VITLALSWLA MRYIPWPFTC VIVLLMWSAV RLPRMEAFLI
FLATVIVVSL MLANDPTLLA TPKTDVMVNM PWLPFLMILL PANMMTMVMY AFRTERKHIT
ESESRFRNAM EYSAIGMALV GTEGQWLQVN KSLSHFLGYS QDELRTMTFQ QLTWPEDLNN
DLEQLNMLVR GDINSYSMEK RYYTRNGDVV WALLAVSLVR HKDNKPLYFI AQIEDINDLK
QSEQENQRLM ERITQANDAL FQEKERLHIT LDSIGEAVVC IDVAMNITFM NPIAEKMSGW
RQEDALGAPL LTVLRITSGN KGPLLEDIYR ADRSRSDMEQ EIVLHCHNGG SYDIHYSITP
LSTLDGDKIG SVLVIQDVTE SRKMLRQLSY SATHDALTHL ANRASFEKQL QQRLQTIQES
PQHHALVFID LDRFKAVNDS AGHAAGDALL RELASLMLSM LRSGDLLARL GGDEFGLLLP
DCNSDSARFI VTRLINAVNE YHFMWEGRLH RIGASAGITM INEHNCQLTE VVSQADIACY
AAKNSGRGRL TVYEPQHALT SSKGMMPLEE QWHMIKNNHL LMLARNVAPP RTPEATSFWL
VSLRLWTSEG EVMEERAFRA GLADSALHHA LDRRVFHEFF HHAATAVASK GLSVALPLSA
AGLYSATLID ELLEQLEHSP LPPRLLHLII PADVIVKQAQ TAAATLRKLR QRGCQVILSH
VGRDLQLFNL LTPHIADYLL LDSDLIANVH ESLMDEMLTS IIQGHAQHLD IKTLAGPVQN
PQVLDTLSRI GVDLIYGDTI AEAQPLDLLL NTSYFAIH
|
|---|
| |