| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1993 |
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| Symbol | yebU |
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| ID | 6516671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | + |
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| Start bp | 1926485 |
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| End bp | 1928026 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642747081 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_002114882 |
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| Protein GI | 194734489 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.956035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCACC GCTCTGCCAC GTTAAACACC AGGCTCCGGC GTACTCGCGC CGGAGCGTTT
TATGCTACAC TGCGCGCCTG TTTTTTTGCC GGCGATACAC CTGTGGCTCA ACACGCTGTC
TATTTTCCTG ACGCTTTTCT GACGCAAATG CGTGAAGCAA TGCCTTCCAC GCTCTCTTTT
GATGAATTTA TTTCGGCCTG CCAACGCCCG TTGCGCCGTA GTATACGCAT CAATACGCTT
AAAATATCCG TGGCTGATTT CCTTGCCCTA ATCGCGCCCT ACGGCTGGTC GCTCACGCCA
ATTCCGTGGT GTCATGAAGG ATTCTGGATC GAGCGCGATG ATGAAGAGGC ATTGCCGCTT
GGCAGTACCG CTGAGCATTT AAGCGGCCTG TTTTACATTC AGGAGGCCAG TTCGATGCTG
CCGGTCGCGG CCCTGTTCGC CGATGATAAT CATCCGCAGC GGGTCATGGA TATGGCAGCG
GCGCCTGGCT CCAAAACCAC GCAGATCGCT GCCCGCATGG GGAACCGCGG CGCCATTCTG
GCCAACGAAT TTTCGGCCAG CCGCGTCAAA GTTCTGCACG CTAATATCAG CCGATGTGGA
ATCGCCAATA CCGCACTGAC GCATTTCGAT GGCCGCGTAT TTGGCGCTGC GTTACCGGAG
ATGTTTGACG CTATCCTGCT GGATGCGCCC TGCTCTGGCG AAGGCGTAGT ACGTAAAGAT
CCTGATGCGC TAAAAAACTG GTCGCCAGAA AGCAATCTGG ATATCGCGGC GACACAGCGG
GAACTGCTCG ACAGCGCTTT TCATGCTTTA CGACCCGGCG GCACGCTGGT CTACTCCACC
TGCACGTTAA ATCGCCAGGA AAACGAAGCG GTCTGCCTCT GGCTGAAAGA GACCTACGCC
GACGCCGTTG AATTTTTGCC GCTGGGTGAT CTGTTTCCTG ACGCTGACCG CGCCCTCACC
CCGGAAGGCT TCCTGCACGT CTTCCCGCAA ATTTACGACT GCGAAGGATT CTTTGTCGCA
CGTCTGCGTA AAATGTCATC CCTTCCAGCC ATGCCCGCGC CGGGGTATAA AGTGGGGGCA
TTTCCTTTTA CCCCCCTCAA AGGCCGCGAA GCATTACACG TTACCCAGGC GGCCAACGCC
GTCGGACTGC TGTGGGATGA AAATCTCCAT CTTTGGCAGC GTGATAAAGA GGTCTGGCTG
TTCCCGGCAG AGATTGAATC ACTGATCGGA AAAGTCCGTT TTTCCCGGCT CGGTATTAAG
CTGGCTGAAA GTCATAATAA AGGCTATCGC TGGCAGCATG AGGCGACGAT AGCCCTTGCC
TGCCCGACTC ATGCTCACGC GTTCGAGCTT TCTGCGCAAG AGGCGGAGGA GTGGTATCGC
GGTCGGGATA TTTATCCGCA AACACCCCCT GCCGCTGATG ATGTCCTGGT GACATTCCAG
CATCAGCCGC TTGGTCTGGC AAAACGTATC GGCGCCAGAA TAAAGAACAG TTACCCGCGT
GAACTGGTAC GTGATGGCAA ACTCTTTACT GGTAATAGCT AA
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| Protein sequence | MGHRSATLNT RLRRTRAGAF YATLRACFFA GDTPVAQHAV YFPDAFLTQM REAMPSTLSF
DEFISACQRP LRRSIRINTL KISVADFLAL IAPYGWSLTP IPWCHEGFWI ERDDEEALPL
GSTAEHLSGL FYIQEASSML PVAALFADDN HPQRVMDMAA APGSKTTQIA ARMGNRGAIL
ANEFSASRVK VLHANISRCG IANTALTHFD GRVFGAALPE MFDAILLDAP CSGEGVVRKD
PDALKNWSPE SNLDIAATQR ELLDSAFHAL RPGGTLVYST CTLNRQENEA VCLWLKETYA
DAVEFLPLGD LFPDADRALT PEGFLHVFPQ IYDCEGFFVA RLRKMSSLPA MPAPGYKVGA
FPFTPLKGRE ALHVTQAANA VGLLWDENLH LWQRDKEVWL FPAEIESLIG KVRFSRLGIK
LAESHNKGYR WQHEATIALA CPTHAHAFEL SAQEAEEWYR GRDIYPQTPP AADDVLVTFQ
HQPLGLAKRI GARIKNSYPR ELVRDGKLFT GNS
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