| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1876 |
|---|
| Symbol | oppF |
|---|
| ID | 6518581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 1813010 |
|---|
| End bp | 1814014 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642746971 |
|---|
| Product | oligopeptide ABC transporter ATP-binding protein OppF |
|---|
| Protein accession | YP_002114774 |
|---|
| Protein GI | 194737778 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.650916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.695732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG TGATTGAACA ACGTAAAGTT CTCCTCGAAA TCGCCGATCT GAAAGTACAT
TTTGATATCA AAGAAGGGAA GCAGTGGTTC TGGCAACCGC CGAAAACCCT GAAAGCGGTG
GACGGCGTTA CGCTACGCCT GTATGAAGGC GAAACGCTGG GCGTGGTGGG GGAATCCGGC
TGCGGCAAGT CGACGTTTGC GCGCGCCATT ATTGGTCTGG TGAAGGCGAC AGACGGTAAA
GTCGCCTGGC TGGGAAAAGA TCTGCTGGGC ATGAAAGCGG ATGAGTGGCG CGAGGTGCGC
AGCGATATCC AGATGATTTT CCAGGACCCG CTGGCGTCAC TCAACCCGCG AATGACGATT
GGCGAAATTA TCGCTGAACC GCTGCGCACT TATCATCCTA AACTTTCGCG CCAGGACGTG
CGTGACCGCG TGAAAGCCAT GATGCTGAAA GTGGGGCTGC TGCCGAATCT CATTAACCGT
TATCCCCATG AATTTTCCGG GGGGCAGTGC CAGCGCATCG GTATCGCCCG GGCGTTGATC
CTGGAACCTA AGCTTATTAT TTGCGATGAG CCGGTGTCGG CGCTGGACGT TTCTATTCAG
GCGCAGGTGG TGAATTTGCT CCAGCAGTTA CAGCGAGAGA TGGGGCTGTC GTTGATTTTT
ATTGCGCACG ATCTGGCGGT CGTAAAGCAC ATATCCGATC GTGTCCTGGT GATGTATCTC
GGTCATGCGG TAGAATTGGG CACCTATGAT GAGGTGTACC ATAACCCACT GCATCCTTAT
ACCAAAGCGC TGATGTCGGC GGTACCGATT CCCGATCCCA ATCTGGAGCG AAATAAGAAG
ATACAATTGC TGGAGGGCGA ATTACCTTCG CCCATTAACC CACCTTCCGG CTGCGTGTTC
CGTACACGCT GTCCGCTAGC CGGGCCAGAA TGCGCGCTAA CGCGACCGGT GCTGGAAGGG
AGTTTTCGCC ATGCCGTTTC CTGCCTTAAA GTAGACCCGT TATAA
|
|---|
| Protein sequence | MNAVIEQRKV LLEIADLKVH FDIKEGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG
CGKSTFARAI IGLVKATDGK VAWLGKDLLG MKADEWREVR SDIQMIFQDP LASLNPRMTI
GEIIAEPLRT YHPKLSRQDV RDRVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI
LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL
GHAVELGTYD EVYHNPLHPY TKALMSAVPI PDPNLERNKK IQLLEGELPS PINPPSGCVF
RTRCPLAGPE CALTRPVLEG SFRHAVSCLK VDPL
|
|---|
| |